miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 3' -62 NC_004065.1 + 87473 1.08 0.001682
Target:  5'- aGAUCUCCGGACCCGCCACCGGGCAGAu -3'
miRNA:   3'- -CUAGAGGCCUGGGCGGUGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 18128 0.79 0.165465
Target:  5'- --cCUCCGGGCCCGCCGC-GGGaCGGGa -3'
miRNA:   3'- cuaGAGGCCUGGGCGGUGgCCC-GUCU- -5'
16058 3' -62 NC_004065.1 + 197510 0.76 0.25079
Target:  5'- aGGUCUCCgagGGACCCgGCCGCgCGcGGUAGAa -3'
miRNA:   3'- -CUAGAGG---CCUGGG-CGGUG-GC-CCGUCU- -5'
16058 3' -62 NC_004065.1 + 130621 0.75 0.26224
Target:  5'- aGAUCUCCaGcaacgcGCCCGCCGCCaGGCAGc -3'
miRNA:   3'- -CUAGAGGcC------UGGGCGGUGGcCCGUCu -5'
16058 3' -62 NC_004065.1 + 38749 0.75 0.266347
Target:  5'- cAUCUCCGGcguGCCCGCgaguaccguuuccaCACCGGGCuGAc -3'
miRNA:   3'- cUAGAGGCC---UGGGCG--------------GUGGCCCGuCU- -5'
16058 3' -62 NC_004065.1 + 93344 0.75 0.280207
Target:  5'- -cUCgagCCGG-CCCGCCGCCGGcCAGAc -3'
miRNA:   3'- cuAGa--GGCCuGGGCGGUGGCCcGUCU- -5'
16058 3' -62 NC_004065.1 + 203067 0.73 0.347107
Target:  5'- cGAgCUCCGGAgCCCGCCgcggccGCCGGaGCGGu -3'
miRNA:   3'- -CUaGAGGCCU-GGGCGG------UGGCC-CGUCu -5'
16058 3' -62 NC_004065.1 + 202310 0.73 0.361786
Target:  5'- aGUCUCUcaGGAUCUGCUcucgguccGCCGGGCGGAu -3'
miRNA:   3'- cUAGAGG--CCUGGGCGG--------UGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 145677 0.72 0.39163
Target:  5'- cGAUC-CCGGAUucgacgaCCGCCGCuaaCGGGCGGGg -3'
miRNA:   3'- -CUAGaGGCCUG-------GGCGGUG---GCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 203606 0.72 0.416468
Target:  5'- -cUCUCgGaGGCcgCCGCCGCCGuGGCGGAg -3'
miRNA:   3'- cuAGAGgC-CUG--GGCGGUGGC-CCGUCU- -5'
16058 3' -62 NC_004065.1 + 179754 0.71 0.467157
Target:  5'- cGGUCUCgGGGCCCGa-AUCGGGCGu- -3'
miRNA:   3'- -CUAGAGgCCUGGGCggUGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 182465 0.7 0.530034
Target:  5'- --cCUCUGGGCCUggGUCGCUGGGUGGGc -3'
miRNA:   3'- cuaGAGGCCUGGG--CGGUGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 229473 0.7 0.539283
Target:  5'- -cUCUCCGGGCCgggCGCCGCuCGucGCGGAa -3'
miRNA:   3'- cuAGAGGCCUGG---GCGGUG-GCc-CGUCU- -5'
16058 3' -62 NC_004065.1 + 120541 0.7 0.552321
Target:  5'- gGGUCUCCGGugUgccggcggcggucggCGCgAgCGGGCGGGa -3'
miRNA:   3'- -CUAGAGGCCugG---------------GCGgUgGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 63060 0.69 0.567336
Target:  5'- cGAUC-CCGGACCUGCUgucGCgCGaGCAGAa -3'
miRNA:   3'- -CUAGaGGCCUGGGCGG---UG-GCcCGUCU- -5'
16058 3' -62 NC_004065.1 + 29067 0.69 0.575827
Target:  5'- cGAUC-CUGGAgCCGCCGcgcucccugcgcuCCGaGGCGGAg -3'
miRNA:   3'- -CUAGaGGCCUgGGCGGU-------------GGC-CCGUCU- -5'
16058 3' -62 NC_004065.1 + 484 0.69 0.575827
Target:  5'- --cCUCCGGGCCgcgCGCCGCguccgcgggaaggCGGGguGAg -3'
miRNA:   3'- cuaGAGGCCUGG---GCGGUG-------------GCCCguCU- -5'
16058 3' -62 NC_004065.1 + 229571 0.69 0.576773
Target:  5'- gGGUCcCCGGACguuaCGCCGCgaGGGCGGc -3'
miRNA:   3'- -CUAGaGGCCUGg---GCGGUGg-CCCGUCu -5'
16058 3' -62 NC_004065.1 + 202369 0.69 0.576773
Target:  5'- gGAUCUCCGGucACCCaagacaucGCgCACgagaCGGGCGGAc -3'
miRNA:   3'- -CUAGAGGCC--UGGG--------CG-GUG----GCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 79614 0.69 0.595744
Target:  5'- ----gCCGGACCCGCUGCgCGcGCGGAc -3'
miRNA:   3'- cuagaGGCCUGGGCGGUG-GCcCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.