Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16058 | 3' | -62 | NC_004065.1 | + | 213635 | 0.69 | 0.605268 |
Target: 5'- aGAUCcCCGGAcCCCGUCAUCucuaGGGUAGu -3' miRNA: 3'- -CUAGaGGCCU-GGGCGGUGG----CCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 178201 | 0.68 | 0.614809 |
Target: 5'- cGAUggaUCgGGAgUCCGCCAuCCGGGCGGc -3' miRNA: 3'- -CUAg--AGgCCU-GGGCGGU-GGCCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 119306 | 0.68 | 0.618629 |
Target: 5'- aGGUCUUCGGGucgaggguggcggcuCUCGCC-CUGGGCAGc -3' miRNA: 3'- -CUAGAGGCCU---------------GGGCGGuGGCCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 22013 | 0.68 | 0.633919 |
Target: 5'- cAUCgccgCCGGcacuaACCCgGCCAcggccCCGGGCAGGc -3' miRNA: 3'- cUAGa---GGCC-----UGGG-CGGU-----GGCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 67821 | 0.68 | 0.643475 |
Target: 5'- cGggCgCCGGACgUGCCGCCGcaGCAGAa -3' miRNA: 3'- -CuaGaGGCCUGgGCGGUGGCc-CGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 210712 | 0.68 | 0.653024 |
Target: 5'- --cCUCCGGguaggaugacGCCCGUCGCCGGaCGGu -3' miRNA: 3'- cuaGAGGCC----------UGGGCGGUGGCCcGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 184476 | 0.68 | 0.653024 |
Target: 5'- uGUUUCUGGGCggcugccgCCGCCGCCGcGGCGc- -3' miRNA: 3'- cUAGAGGCCUG--------GGCGGUGGC-CCGUcu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 193655 | 0.67 | 0.672071 |
Target: 5'- aGGUCUCUguGGGCaagCGCCACUGGcacGCAGGu -3' miRNA: 3'- -CUAGAGG--CCUGg--GCGGUGGCC---CGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 88398 | 0.67 | 0.681555 |
Target: 5'- --cCUCCGucgccGAgCCGCCACCGccGGCAGc -3' miRNA: 3'- cuaGAGGC-----CUgGGCGGUGGC--CCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 110694 | 0.67 | 0.709766 |
Target: 5'- uGUCUCUGGAgCUGCC-CaGGGCgAGAg -3' miRNA: 3'- cUAGAGGCCUgGGCGGuGgCCCG-UCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 180023 | 0.67 | 0.719065 |
Target: 5'- uGUC-CCGGACUCGUcucgCACCGuGCGGAu -3' miRNA: 3'- cUAGaGGCCUGGGCG----GUGGCcCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 81658 | 0.67 | 0.719065 |
Target: 5'- uGUCUCUGGugUCGCUgacgcugacggACCGGGUg-- -3' miRNA: 3'- cUAGAGGCCugGGCGG-----------UGGCCCGucu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 122477 | 0.67 | 0.719065 |
Target: 5'- cGUC-CCGGuagcgcacgACCCGCaGCUGGGCGGu -3' miRNA: 3'- cUAGaGGCC---------UGGGCGgUGGCCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 120440 | 0.67 | 0.719065 |
Target: 5'- -cUCgUCCGGGCCCucuuGCUGUCGGGCGGc -3' miRNA: 3'- cuAG-AGGCCUGGG----CGGUGGCCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 109083 | 0.66 | 0.728298 |
Target: 5'- -cUgUCCGGGCCCauGUCGgacauuCUGGGCGGAg -3' miRNA: 3'- cuAgAGGCCUGGG--CGGU------GGCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 83448 | 0.66 | 0.731972 |
Target: 5'- cGggCUCCGGcacgagcggcaccuuACCCGCgACgccgacgauguCGGGCAGGc -3' miRNA: 3'- -CuaGAGGCC---------------UGGGCGgUG-----------GCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 68744 | 0.66 | 0.73746 |
Target: 5'- gGGUCgcugCCGGACUCGgaCAUCGcGGCGGu -3' miRNA: 3'- -CUAGa---GGCCUGGGCg-GUGGC-CCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 168590 | 0.66 | 0.73746 |
Target: 5'- ----gUCGGGCCgGCC-CUGGGUAGGg -3' miRNA: 3'- cuagaGGCCUGGgCGGuGGCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 77089 | 0.66 | 0.755534 |
Target: 5'- aGAUCUCCucgucGAUuuGCCGCgGcGGCAGc -3' miRNA: 3'- -CUAGAGGc----CUGggCGGUGgC-CCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 18514 | 0.66 | 0.759106 |
Target: 5'- uGGUCgUCGGACUccuggugcacgggauCGUCACCGGGCGc- -3' miRNA: 3'- -CUAGaGGCCUGG---------------GCGGUGGCCCGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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