Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16058 | 3' | -62 | NC_004065.1 | + | 193655 | 0.67 | 0.672071 |
Target: 5'- aGGUCUCUguGGGCaagCGCCACUGGcacGCAGGu -3' miRNA: 3'- -CUAGAGG--CCUGg--GCGGUGGCC---CGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 184476 | 0.68 | 0.653024 |
Target: 5'- uGUUUCUGGGCggcugccgCCGCCGCCGcGGCGc- -3' miRNA: 3'- cUAGAGGCCUG--------GGCGGUGGC-CCGUcu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 210712 | 0.68 | 0.653024 |
Target: 5'- --cCUCCGGguaggaugacGCCCGUCGCCGGaCGGu -3' miRNA: 3'- cuaGAGGCC----------UGGGCGGUGGCCcGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 67821 | 0.68 | 0.643475 |
Target: 5'- cGggCgCCGGACgUGCCGCCGcaGCAGAa -3' miRNA: 3'- -CuaGaGGCCUGgGCGGUGGCc-CGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 22013 | 0.68 | 0.633919 |
Target: 5'- cAUCgccgCCGGcacuaACCCgGCCAcggccCCGGGCAGGc -3' miRNA: 3'- cUAGa---GGCC-----UGGG-CGGU-----GGCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 119306 | 0.68 | 0.618629 |
Target: 5'- aGGUCUUCGGGucgaggguggcggcuCUCGCC-CUGGGCAGc -3' miRNA: 3'- -CUAGAGGCCU---------------GGGCGGuGGCCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 178201 | 0.68 | 0.614809 |
Target: 5'- cGAUggaUCgGGAgUCCGCCAuCCGGGCGGc -3' miRNA: 3'- -CUAg--AGgCCU-GGGCGGU-GGCCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 213635 | 0.69 | 0.605268 |
Target: 5'- aGAUCcCCGGAcCCCGUCAUCucuaGGGUAGu -3' miRNA: 3'- -CUAGaGGCCU-GGGCGGUGG----CCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 79614 | 0.69 | 0.595744 |
Target: 5'- ----gCCGGACCCGCUGCgCGcGCGGAc -3' miRNA: 3'- cuagaGGCCUGGGCGGUG-GCcCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 229571 | 0.69 | 0.576773 |
Target: 5'- gGGUCcCCGGACguuaCGCCGCgaGGGCGGc -3' miRNA: 3'- -CUAGaGGCCUGg---GCGGUGg-CCCGUCu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 202369 | 0.69 | 0.576773 |
Target: 5'- gGAUCUCCGGucACCCaagacaucGCgCACgagaCGGGCGGAc -3' miRNA: 3'- -CUAGAGGCC--UGGG--------CG-GUG----GCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 484 | 0.69 | 0.575827 |
Target: 5'- --cCUCCGGGCCgcgCGCCGCguccgcgggaaggCGGGguGAg -3' miRNA: 3'- cuaGAGGCCUGG---GCGGUG-------------GCCCguCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 29067 | 0.69 | 0.575827 |
Target: 5'- cGAUC-CUGGAgCCGCCGcgcucccugcgcuCCGaGGCGGAg -3' miRNA: 3'- -CUAGaGGCCUgGGCGGU-------------GGC-CCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 63060 | 0.69 | 0.567336 |
Target: 5'- cGAUC-CCGGACCUGCUgucGCgCGaGCAGAa -3' miRNA: 3'- -CUAGaGGCCUGGGCGG---UG-GCcCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 120541 | 0.7 | 0.552321 |
Target: 5'- gGGUCUCCGGugUgccggcggcggucggCGCgAgCGGGCGGGa -3' miRNA: 3'- -CUAGAGGCCugG---------------GCGgUgGCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 229473 | 0.7 | 0.539283 |
Target: 5'- -cUCUCCGGGCCgggCGCCGCuCGucGCGGAa -3' miRNA: 3'- cuAGAGGCCUGG---GCGGUG-GCc-CGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 182465 | 0.7 | 0.530034 |
Target: 5'- --cCUCUGGGCCUggGUCGCUGGGUGGGc -3' miRNA: 3'- cuaGAGGCCUGGG--CGGUGGCCCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 179754 | 0.71 | 0.467157 |
Target: 5'- cGGUCUCgGGGCCCGa-AUCGGGCGu- -3' miRNA: 3'- -CUAGAGgCCUGGGCggUGGCCCGUcu -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 203606 | 0.72 | 0.416468 |
Target: 5'- -cUCUCgGaGGCcgCCGCCGCCGuGGCGGAg -3' miRNA: 3'- cuAGAGgC-CUG--GGCGGUGGC-CCGUCU- -5' |
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16058 | 3' | -62 | NC_004065.1 | + | 145677 | 0.72 | 0.39163 |
Target: 5'- cGAUC-CCGGAUucgacgaCCGCCGCuaaCGGGCGGGg -3' miRNA: 3'- -CUAGaGGCCUG-------GGCGGUG---GCCCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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