miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 3' -62 NC_004065.1 + 484 0.69 0.575827
Target:  5'- --cCUCCGGGCCgcgCGCCGCguccgcgggaaggCGGGguGAg -3'
miRNA:   3'- cuaGAGGCCUGG---GCGGUG-------------GCCCguCU- -5'
16058 3' -62 NC_004065.1 + 18128 0.79 0.165465
Target:  5'- --cCUCCGGGCCCGCCGC-GGGaCGGGa -3'
miRNA:   3'- cuaGAGGCCUGGGCGGUGgCCC-GUCU- -5'
16058 3' -62 NC_004065.1 + 18514 0.66 0.759106
Target:  5'- uGGUCgUCGGACUccuggugcacgggauCGUCACCGGGCGc- -3'
miRNA:   3'- -CUAGaGGCCUGG---------------GCGGUGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 22013 0.68 0.633919
Target:  5'- cAUCgccgCCGGcacuaACCCgGCCAcggccCCGGGCAGGc -3'
miRNA:   3'- cUAGa---GGCC-----UGGG-CGGU-----GGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 29067 0.69 0.575827
Target:  5'- cGAUC-CUGGAgCCGCCGcgcucccugcgcuCCGaGGCGGAg -3'
miRNA:   3'- -CUAGaGGCCUgGGCGGU-------------GGC-CCGUCU- -5'
16058 3' -62 NC_004065.1 + 38749 0.75 0.266347
Target:  5'- cAUCUCCGGcguGCCCGCgaguaccguuuccaCACCGGGCuGAc -3'
miRNA:   3'- cUAGAGGCC---UGGGCG--------------GUGGCCCGuCU- -5'
16058 3' -62 NC_004065.1 + 39938 0.66 0.763548
Target:  5'- cGAUcCUCCGGugCCGCgGCucauuguCGGaCAGAa -3'
miRNA:   3'- -CUA-GAGGCCugGGCGgUG-------GCCcGUCU- -5'
16058 3' -62 NC_004065.1 + 40261 0.66 0.773229
Target:  5'- gGGUUUCUgGGGCgCC-CCGCCGGGUAcGAa -3'
miRNA:   3'- -CUAGAGG-CCUG-GGcGGUGGCCCGU-CU- -5'
16058 3' -62 NC_004065.1 + 63060 0.69 0.567336
Target:  5'- cGAUC-CCGGACCUGCUgucGCgCGaGCAGAa -3'
miRNA:   3'- -CUAGaGGCCUGGGCGG---UG-GCcCGUCU- -5'
16058 3' -62 NC_004065.1 + 67314 0.66 0.771478
Target:  5'- cGGUCUCCGGcguucuucucgcuACCCGCCGgucgaauggcgcuCCGGacgcGCGGu -3'
miRNA:   3'- -CUAGAGGCC-------------UGGGCGGU-------------GGCC----CGUCu -5'
16058 3' -62 NC_004065.1 + 67821 0.68 0.643475
Target:  5'- cGggCgCCGGACgUGCCGCCGcaGCAGAa -3'
miRNA:   3'- -CuaGaGGCCUGgGCGGUGGCc-CGUCU- -5'
16058 3' -62 NC_004065.1 + 68744 0.66 0.73746
Target:  5'- gGGUCgcugCCGGACUCGgaCAUCGcGGCGGu -3'
miRNA:   3'- -CUAGa---GGCCUGGGCg-GUGGC-CCGUCu -5'
16058 3' -62 NC_004065.1 + 77089 0.66 0.755534
Target:  5'- aGAUCUCCucgucGAUuuGCCGCgGcGGCAGc -3'
miRNA:   3'- -CUAGAGGc----CUGggCGGUGgC-CCGUCu -5'
16058 3' -62 NC_004065.1 + 79614 0.69 0.595744
Target:  5'- ----gCCGGACCCGCUGCgCGcGCGGAc -3'
miRNA:   3'- cuagaGGCCUGGGCGGUG-GCcCGUCU- -5'
16058 3' -62 NC_004065.1 + 81658 0.67 0.719065
Target:  5'- uGUCUCUGGugUCGCUgacgcugacggACCGGGUg-- -3'
miRNA:   3'- cUAGAGGCCugGGCGG-----------UGGCCCGucu -5'
16058 3' -62 NC_004065.1 + 83448 0.66 0.731972
Target:  5'- cGggCUCCGGcacgagcggcaccuuACCCGCgACgccgacgauguCGGGCAGGc -3'
miRNA:   3'- -CuaGAGGCC---------------UGGGCGgUG-----------GCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 87473 1.08 0.001682
Target:  5'- aGAUCUCCGGACCCGCCACCGGGCAGAu -3'
miRNA:   3'- -CUAGAGGCCUGGGCGGUGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 88398 0.67 0.681555
Target:  5'- --cCUCCGucgccGAgCCGCCACCGccGGCAGc -3'
miRNA:   3'- cuaGAGGC-----CUgGGCGGUGGC--CCGUCu -5'
16058 3' -62 NC_004065.1 + 93344 0.75 0.280207
Target:  5'- -cUCgagCCGG-CCCGCCGCCGGcCAGAc -3'
miRNA:   3'- cuAGa--GGCCuGGGCGGUGGCCcGUCU- -5'
16058 3' -62 NC_004065.1 + 102038 0.66 0.773229
Target:  5'- --cCUCgGuGACCCGCggcgGCCGGGCGu- -3'
miRNA:   3'- cuaGAGgC-CUGGGCGg---UGGCCCGUcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.