miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 3' -62 NC_004065.1 + 109083 0.66 0.728298
Target:  5'- -cUgUCCGGGCCCauGUCGgacauuCUGGGCGGAg -3'
miRNA:   3'- cuAgAGGCCUGGG--CGGU------GGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 110694 0.67 0.709766
Target:  5'- uGUCUCUGGAgCUGCC-CaGGGCgAGAg -3'
miRNA:   3'- cUAGAGGCCUgGGCGGuGgCCCG-UCU- -5'
16058 3' -62 NC_004065.1 + 119306 0.68 0.618629
Target:  5'- aGGUCUUCGGGucgaggguggcggcuCUCGCC-CUGGGCAGc -3'
miRNA:   3'- -CUAGAGGCCU---------------GGGCGGuGGCCCGUCu -5'
16058 3' -62 NC_004065.1 + 119980 0.66 0.773229
Target:  5'- --cCUCUGGAgCgCGCCGagCGGGUGGAa -3'
miRNA:   3'- cuaGAGGCCUgG-GCGGUg-GCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 120440 0.67 0.719065
Target:  5'- -cUCgUCCGGGCCCucuuGCUGUCGGGCGGc -3'
miRNA:   3'- cuAG-AGGCCUGGG----CGGUGGCCCGUCu -5'
16058 3' -62 NC_004065.1 + 120541 0.7 0.552321
Target:  5'- gGGUCUCCGGugUgccggcggcggucggCGCgAgCGGGCGGGa -3'
miRNA:   3'- -CUAGAGGCCugG---------------GCGgUgGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 122477 0.67 0.719065
Target:  5'- cGUC-CCGGuagcgcacgACCCGCaGCUGGGCGGu -3'
miRNA:   3'- cUAGaGGCC---------UGGGCGgUGGCCCGUCu -5'
16058 3' -62 NC_004065.1 + 125422 0.66 0.764433
Target:  5'- aGUCggCCGGcGCCagCGCC-UCGGGCAGGu -3'
miRNA:   3'- cUAGa-GGCC-UGG--GCGGuGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 130621 0.75 0.26224
Target:  5'- aGAUCUCCaGcaacgcGCCCGCCGCCaGGCAGc -3'
miRNA:   3'- -CUAGAGGcC------UGGGCGGUGGcCCGUCu -5'
16058 3' -62 NC_004065.1 + 145677 0.72 0.39163
Target:  5'- cGAUC-CCGGAUucgacgaCCGCCGCuaaCGGGCGGGg -3'
miRNA:   3'- -CUAGaGGCCUG-------GGCGGUG---GCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 168590 0.66 0.73746
Target:  5'- ----gUCGGGCCgGCC-CUGGGUAGGg -3'
miRNA:   3'- cuagaGGCCUGGgCGGuGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 178201 0.68 0.614809
Target:  5'- cGAUggaUCgGGAgUCCGCCAuCCGGGCGGc -3'
miRNA:   3'- -CUAg--AGgCCU-GGGCGGU-GGCCCGUCu -5'
16058 3' -62 NC_004065.1 + 179754 0.71 0.467157
Target:  5'- cGGUCUCgGGGCCCGa-AUCGGGCGu- -3'
miRNA:   3'- -CUAGAGgCCUGGGCggUGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 180023 0.67 0.719065
Target:  5'- uGUC-CCGGACUCGUcucgCACCGuGCGGAu -3'
miRNA:   3'- cUAGaGGCCUGGGCG----GUGGCcCGUCU- -5'
16058 3' -62 NC_004065.1 + 182465 0.7 0.530034
Target:  5'- --cCUCUGGGCCUggGUCGCUGGGUGGGc -3'
miRNA:   3'- cuaGAGGCCUGGG--CGGUGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 184476 0.68 0.653024
Target:  5'- uGUUUCUGGGCggcugccgCCGCCGCCGcGGCGc- -3'
miRNA:   3'- cUAGAGGCCUG--------GGCGGUGGC-CCGUcu -5'
16058 3' -62 NC_004065.1 + 193655 0.67 0.672071
Target:  5'- aGGUCUCUguGGGCaagCGCCACUGGcacGCAGGu -3'
miRNA:   3'- -CUAGAGG--CCUGg--GCGGUGGCC---CGUCU- -5'
16058 3' -62 NC_004065.1 + 197510 0.76 0.25079
Target:  5'- aGGUCUCCgagGGACCCgGCCGCgCGcGGUAGAa -3'
miRNA:   3'- -CUAGAGG---CCUGGG-CGGUG-GC-CCGUCU- -5'
16058 3' -62 NC_004065.1 + 202310 0.73 0.361786
Target:  5'- aGUCUCUcaGGAUCUGCUcucgguccGCCGGGCGGAu -3'
miRNA:   3'- cUAGAGG--CCUGGGCGG--------UGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 202369 0.69 0.576773
Target:  5'- gGAUCUCCGGucACCCaagacaucGCgCACgagaCGGGCGGAc -3'
miRNA:   3'- -CUAGAGGCC--UGGG--------CG-GUG----GCCCGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.