Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16058 | 3' | -62 | NC_004065.1 | + | 229571 | 0.69 | 0.576773 |
Target: 5'- gGGUCcCCGGACguuaCGCCGCgaGGGCGGc -3' miRNA: 3'- -CUAGaGGCCUGg---GCGGUGg-CCCGUCu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 229473 | 0.7 | 0.539283 |
Target: 5'- -cUCUCCGGGCCgggCGCCGCuCGucGCGGAa -3' miRNA: 3'- cuAGAGGCCUGG---GCGGUG-GCc-CGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 225647 | 0.66 | 0.770602 |
Target: 5'- --aCUCCGGcuCCCGCCGCCGccgucgcgcuccacGcGCAGc -3' miRNA: 3'- cuaGAGGCCu-GGGCGGUGGC--------------C-CGUCu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 213635 | 0.69 | 0.605268 |
Target: 5'- aGAUCcCCGGAcCCCGUCAUCucuaGGGUAGu -3' miRNA: 3'- -CUAGaGGCCU-GGGCGGUGG----CCCGUCu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 213568 | 0.66 | 0.763548 |
Target: 5'- cGGUCUagcgaacgugguaCCGGGCUCGCUAgUGGGCucGGGc -3' miRNA: 3'- -CUAGA-------------GGCCUGGGCGGUgGCCCG--UCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 210712 | 0.68 | 0.653024 |
Target: 5'- --cCUCCGGguaggaugacGCCCGUCGCCGGaCGGu -3' miRNA: 3'- cuaGAGGCC----------UGGGCGGUGGCCcGUCu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 203606 | 0.72 | 0.416468 |
Target: 5'- -cUCUCgGaGGCcgCCGCCGCCGuGGCGGAg -3' miRNA: 3'- cuAGAGgC-CUG--GGCGGUGGC-CCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 203067 | 0.73 | 0.347107 |
Target: 5'- cGAgCUCCGGAgCCCGCCgcggccGCCGGaGCGGu -3' miRNA: 3'- -CUaGAGGCCU-GGGCGG------UGGCC-CGUCu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 202369 | 0.69 | 0.576773 |
Target: 5'- gGAUCUCCGGucACCCaagacaucGCgCACgagaCGGGCGGAc -3' miRNA: 3'- -CUAGAGGCC--UGGG--------CG-GUG----GCCCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 202310 | 0.73 | 0.361786 |
Target: 5'- aGUCUCUcaGGAUCUGCUcucgguccGCCGGGCGGAu -3' miRNA: 3'- cUAGAGG--CCUGGGCGG--------UGGCCCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 197510 | 0.76 | 0.25079 |
Target: 5'- aGGUCUCCgagGGACCCgGCCGCgCGcGGUAGAa -3' miRNA: 3'- -CUAGAGG---CCUGGG-CGGUG-GC-CCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 193655 | 0.67 | 0.672071 |
Target: 5'- aGGUCUCUguGGGCaagCGCCACUGGcacGCAGGu -3' miRNA: 3'- -CUAGAGG--CCUGg--GCGGUGGCC---CGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 184476 | 0.68 | 0.653024 |
Target: 5'- uGUUUCUGGGCggcugccgCCGCCGCCGcGGCGc- -3' miRNA: 3'- cUAGAGGCCUG--------GGCGGUGGC-CCGUcu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 182465 | 0.7 | 0.530034 |
Target: 5'- --cCUCUGGGCCUggGUCGCUGGGUGGGc -3' miRNA: 3'- cuaGAGGCCUGGG--CGGUGGCCCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 180023 | 0.67 | 0.719065 |
Target: 5'- uGUC-CCGGACUCGUcucgCACCGuGCGGAu -3' miRNA: 3'- cUAGaGGCCUGGGCG----GUGGCcCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 179754 | 0.71 | 0.467157 |
Target: 5'- cGGUCUCgGGGCCCGa-AUCGGGCGu- -3' miRNA: 3'- -CUAGAGgCCUGGGCggUGGCCCGUcu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 178201 | 0.68 | 0.614809 |
Target: 5'- cGAUggaUCgGGAgUCCGCCAuCCGGGCGGc -3' miRNA: 3'- -CUAg--AGgCCU-GGGCGGU-GGCCCGUCu -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 168590 | 0.66 | 0.73746 |
Target: 5'- ----gUCGGGCCgGCC-CUGGGUAGGg -3' miRNA: 3'- cuagaGGCCUGGgCGGuGGCCCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 145677 | 0.72 | 0.39163 |
Target: 5'- cGAUC-CCGGAUucgacgaCCGCCGCuaaCGGGCGGGg -3' miRNA: 3'- -CUAGaGGCCUG-------GGCGGUG---GCCCGUCU- -5' |
|||||||
16058 | 3' | -62 | NC_004065.1 | + | 130621 | 0.75 | 0.26224 |
Target: 5'- aGAUCUCCaGcaacgcGCCCGCCGCCaGGCAGc -3' miRNA: 3'- -CUAGAGGcC------UGGGCGGUGGcCCGUCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home