miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 3' -62 NC_004065.1 + 203067 0.73 0.347107
Target:  5'- cGAgCUCCGGAgCCCGCCgcggccGCCGGaGCGGu -3'
miRNA:   3'- -CUaGAGGCCU-GGGCGG------UGGCC-CGUCu -5'
16058 3' -62 NC_004065.1 + 39938 0.66 0.763548
Target:  5'- cGAUcCUCCGGugCCGCgGCucauuguCGGaCAGAa -3'
miRNA:   3'- -CUA-GAGGCCugGGCGgUG-------GCCcGUCU- -5'
16058 3' -62 NC_004065.1 + 67314 0.66 0.771478
Target:  5'- cGGUCUCCGGcguucuucucgcuACCCGCCGgucgaauggcgcuCCGGacgcGCGGu -3'
miRNA:   3'- -CUAGAGGCC-------------UGGGCGGU-------------GGCC----CGUCu -5'
16058 3' -62 NC_004065.1 + 40261 0.66 0.773229
Target:  5'- gGGUUUCUgGGGCgCC-CCGCCGGGUAcGAa -3'
miRNA:   3'- -CUAGAGG-CCUG-GGcGGUGGCCCGU-CU- -5'
16058 3' -62 NC_004065.1 + 29067 0.69 0.575827
Target:  5'- cGAUC-CUGGAgCCGCCGcgcucccugcgcuCCGaGGCGGAg -3'
miRNA:   3'- -CUAGaGGCCUgGGCGGU-------------GGC-CCGUCU- -5'
16058 3' -62 NC_004065.1 + 79614 0.69 0.595744
Target:  5'- ----gCCGGACCCGCUGCgCGcGCGGAc -3'
miRNA:   3'- cuagaGGCCUGGGCGGUG-GCcCGUCU- -5'
16058 3' -62 NC_004065.1 + 184476 0.68 0.653024
Target:  5'- uGUUUCUGGGCggcugccgCCGCCGCCGcGGCGc- -3'
miRNA:   3'- cUAGAGGCCUG--------GGCGGUGGC-CCGUcu -5'
16058 3' -62 NC_004065.1 + 210712 0.68 0.653024
Target:  5'- --cCUCCGGguaggaugacGCCCGUCGCCGGaCGGu -3'
miRNA:   3'- cuaGAGGCC----------UGGGCGGUGGCCcGUCu -5'
16058 3' -62 NC_004065.1 + 180023 0.67 0.719065
Target:  5'- uGUC-CCGGACUCGUcucgCACCGuGCGGAu -3'
miRNA:   3'- cUAGaGGCCUGGGCG----GUGGCcCGUCU- -5'
16058 3' -62 NC_004065.1 + 168590 0.66 0.73746
Target:  5'- ----gUCGGGCCgGCC-CUGGGUAGGg -3'
miRNA:   3'- cuagaGGCCUGGgCGGuGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 81658 0.67 0.719065
Target:  5'- uGUCUCUGGugUCGCUgacgcugacggACCGGGUg-- -3'
miRNA:   3'- cUAGAGGCCugGGCGG-----------UGGCCCGucu -5'
16058 3' -62 NC_004065.1 + 203606 0.72 0.416468
Target:  5'- -cUCUCgGaGGCcgCCGCCGCCGuGGCGGAg -3'
miRNA:   3'- cuAGAGgC-CUG--GGCGGUGGC-CCGUCU- -5'
16058 3' -62 NC_004065.1 + 77089 0.66 0.755534
Target:  5'- aGAUCUCCucgucGAUuuGCCGCgGcGGCAGc -3'
miRNA:   3'- -CUAGAGGc----CUGggCGGUGgC-CCGUCu -5'
16058 3' -62 NC_004065.1 + 179754 0.71 0.467157
Target:  5'- cGGUCUCgGGGCCCGa-AUCGGGCGu- -3'
miRNA:   3'- -CUAGAGgCCUGGGCggUGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 110694 0.67 0.709766
Target:  5'- uGUCUCUGGAgCUGCC-CaGGGCgAGAg -3'
miRNA:   3'- cUAGAGGCCUgGGCGGuGgCCCG-UCU- -5'
16058 3' -62 NC_004065.1 + 18514 0.66 0.759106
Target:  5'- uGGUCgUCGGACUccuggugcacgggauCGUCACCGGGCGc- -3'
miRNA:   3'- -CUAGaGGCCUGG---------------GCGGUGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 102038 0.66 0.773229
Target:  5'- --cCUCgGuGACCCGCggcgGCCGGGCGu- -3'
miRNA:   3'- cuaGAGgC-CUGGGCGg---UGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 229473 0.7 0.539283
Target:  5'- -cUCUCCGGGCCgggCGCCGCuCGucGCGGAa -3'
miRNA:   3'- cuAGAGGCCUGG---GCGGUG-GCc-CGUCU- -5'
16058 3' -62 NC_004065.1 + 178201 0.68 0.614809
Target:  5'- cGAUggaUCgGGAgUCCGCCAuCCGGGCGGc -3'
miRNA:   3'- -CUAg--AGgCCU-GGGCGGU-GGCCCGUCu -5'
16058 3' -62 NC_004065.1 + 83448 0.66 0.731972
Target:  5'- cGggCUCCGGcacgagcggcaccuuACCCGCgACgccgacgauguCGGGCAGGc -3'
miRNA:   3'- -CuaGAGGCC---------------UGGGCGgUG-----------GCCCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.