miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 5' -59 NC_004065.1 + 61319 0.66 0.860379
Target:  5'- cGACCUCGCacuCGacGGCGAGAGCCGc -3'
miRNA:   3'- -UUGGAGCGgucGUccCUGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 29744 0.66 0.859637
Target:  5'- -uCCUCcggaCAGCAGaGGuacuccuGCGAGAGCCGa -3'
miRNA:   3'- uuGGAGcg--GUCGUC-CC-------UGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 147483 0.66 0.858149
Target:  5'- cACCauguggUGCCGGCGGGGaACGucauccgcauguucGGGGCCa -3'
miRNA:   3'- uUGGa-----GCGGUCGUCCC-UGU--------------UCUCGGc -5'
16058 5' -59 NC_004065.1 + 126708 0.66 0.852879
Target:  5'- cGACCUaCGCCuGCGGcGACcgcuGAGCCu -3'
miRNA:   3'- -UUGGA-GCGGuCGUCcCUGuu--CUCGGc -5'
16058 5' -59 NC_004065.1 + 129563 0.66 0.852879
Target:  5'- gGGCCgauGCCGGUguuccGGGugGAGAuGCCGg -3'
miRNA:   3'- -UUGGag-CGGUCGu----CCCugUUCU-CGGC- -5'
16058 5' -59 NC_004065.1 + 105070 0.66 0.852879
Target:  5'- --aCUUGCCAGCGGGGcaggucguACAGGAuagGCgCGg -3'
miRNA:   3'- uugGAGCGGUCGUCCC--------UGUUCU---CG-GC- -5'
16058 5' -59 NC_004065.1 + 114783 0.66 0.852879
Target:  5'- gGAUCUCgaaGCCGGCgagcguacgGGGGGCAAGAGaacgCGg -3'
miRNA:   3'- -UUGGAG---CGGUCG---------UCCCUGUUCUCg---GC- -5'
16058 5' -59 NC_004065.1 + 197147 0.66 0.852118
Target:  5'- aGACgCUCGCCGGCgcgccucucgaccAGGGACGccAGCUc -3'
miRNA:   3'- -UUG-GAGCGGUCG-------------UCCCUGUucUCGGc -5'
16058 5' -59 NC_004065.1 + 109824 0.66 0.852118
Target:  5'- -cCCUCGUCgccguccugcugcGGCGGGGggccaucgcGCAGGuGCCGg -3'
miRNA:   3'- uuGGAGCGG-------------UCGUCCC---------UGUUCuCGGC- -5'
16058 5' -59 NC_004065.1 + 31295 0.66 0.848289
Target:  5'- gGACgUCGgCGGCGucgucguucacauguGGGACA-GAGCCa -3'
miRNA:   3'- -UUGgAGCgGUCGU---------------CCCUGUuCUCGGc -5'
16058 5' -59 NC_004065.1 + 168093 0.66 0.845192
Target:  5'- cGCaUCGCCGGgcuccccguCAGGGACGAGAugcGCCc -3'
miRNA:   3'- uUGgAGCGGUC---------GUCCCUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 136097 0.66 0.845192
Target:  5'- gGACCUgggcagggUGCaaugaAGCGGGGAcCGGGAGCuCGg -3'
miRNA:   3'- -UUGGA--------GCGg----UCGUCCCU-GUUCUCG-GC- -5'
16058 5' -59 NC_004065.1 + 87606 0.66 0.845192
Target:  5'- gAGCCggcgCGCCGGCAGGcGA-AAGAugGCCc -3'
miRNA:   3'- -UUGGa---GCGGUCGUCC-CUgUUCU--CGGc -5'
16058 5' -59 NC_004065.1 + 152312 0.66 0.845192
Target:  5'- cGGCggUGCCGGCGGGGACGAugacGGCUu -3'
miRNA:   3'- -UUGgaGCGGUCGUCCCUGUUc---UCGGc -5'
16058 5' -59 NC_004065.1 + 200018 0.66 0.845192
Target:  5'- cACCgcgGUCGuCAGGGGCAGGuGCCGu -3'
miRNA:   3'- uUGGag-CGGUcGUCCCUGUUCuCGGC- -5'
16058 5' -59 NC_004065.1 + 135713 0.66 0.837323
Target:  5'- cGCCgggcUGCgGGCGGGGAUcugguGGAGCUGu -3'
miRNA:   3'- uUGGa---GCGgUCGUCCCUGu----UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 116003 0.66 0.837323
Target:  5'- cGCCgacgugCGCC-GCGGGGGCAGcucucuGCCGa -3'
miRNA:   3'- uUGGa-----GCGGuCGUCCCUGUUcu----CGGC- -5'
16058 5' -59 NC_004065.1 + 173318 0.66 0.837323
Target:  5'- cGCCgcCGCCGcuGCGGcGGAgAAGAGUCGu -3'
miRNA:   3'- uUGGa-GCGGU--CGUC-CCUgUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 139710 0.66 0.837323
Target:  5'- cGCgCUUGCCGGaugAGGGACGu-GGCCGa -3'
miRNA:   3'- uUG-GAGCGGUCg--UCCCUGUucUCGGC- -5'
16058 5' -59 NC_004065.1 + 120442 0.66 0.82928
Target:  5'- cGGCCUgauaCGCCGcCAGGaGACAGGcGGCCa -3'
miRNA:   3'- -UUGGA----GCGGUcGUCC-CUGUUC-UCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.