miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 5' -59 NC_004065.1 + 87507 1.06 0.003411
Target:  5'- cAACCUCGCCAGCAGGGACAAGAGCCGu -3'
miRNA:   3'- -UUGGAGCGGUCGUCCCUGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 6254 0.71 0.545215
Target:  5'- -uCCugUCGUgCGGCGGGGACGagagGGAGCCGa -3'
miRNA:   3'- uuGG--AGCG-GUCGUCCCUGU----UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 119594 0.71 0.545215
Target:  5'- uGGCCUggacgugcaggaCGCCGGCGGcGGAgGAGAcGCCGu -3'
miRNA:   3'- -UUGGA------------GCGGUCGUC-CCUgUUCU-CGGC- -5'
16058 5' -59 NC_004065.1 + 21964 0.71 0.545215
Target:  5'- gGGCCgUCGUCGGCA-GGACGgugAGGGCCGc -3'
miRNA:   3'- -UUGG-AGCGGUCGUcCCUGU---UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 143263 0.71 0.564621
Target:  5'- gGACC-CG-CGGCGGGGGCGgcagcuucaAGGGCCGa -3'
miRNA:   3'- -UUGGaGCgGUCGUCCCUGU---------UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 107764 0.71 0.594048
Target:  5'- uGAgCUgGCCGGCGGGGGguUAGGAcGCCGc -3'
miRNA:   3'- -UUgGAgCGGUCGUCCCU--GUUCU-CGGC- -5'
16058 5' -59 NC_004065.1 + 19443 0.71 0.597993
Target:  5'- cACCgCGCUgcuggcgaugagcguGGUGGGGACGGGAGUCGg -3'
miRNA:   3'- uUGGaGCGG---------------UCGUCCCUGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 112461 0.7 0.623709
Target:  5'- cGCCUgaGCCAGCugacGGGACAGGAGaucCCa -3'
miRNA:   3'- uUGGAg-CGGUCGu---CCCUGUUCUC---GGc -5'
16058 5' -59 NC_004065.1 + 187310 0.7 0.623709
Target:  5'- uGCUgCGCCGGUAGGGGgGGaGGCCGa -3'
miRNA:   3'- uUGGaGCGGUCGUCCCUgUUcUCGGC- -5'
16058 5' -59 NC_004065.1 + 41626 0.7 0.643524
Target:  5'- -cUCUCGCCcGCA-GGACGAGAGCg- -3'
miRNA:   3'- uuGGAGCGGuCGUcCCUGUUCUCGgc -5'
16058 5' -59 NC_004065.1 + 199447 0.7 0.653422
Target:  5'- aGGCgCUCGCC-GCGGcGGaACGGGGGCUGg -3'
miRNA:   3'- -UUG-GAGCGGuCGUC-CC-UGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 46483 0.69 0.692779
Target:  5'- gAACCUCGCCGGCAucaccaagauGucGCGcGAGCCGu -3'
miRNA:   3'- -UUGGAGCGGUCGU----------CccUGUuCUCGGC- -5'
16058 5' -59 NC_004065.1 + 223500 0.68 0.712206
Target:  5'- gGACCagcagaUCGCCGGuCAGGGGaucuAGuGCCGg -3'
miRNA:   3'- -UUGG------AGCGGUC-GUCCCUgu--UCuCGGC- -5'
16058 5' -59 NC_004065.1 + 52820 0.68 0.712206
Target:  5'- -cCCUCGgcaaaagugaCCGGUAGGGG--AGAGCCGa -3'
miRNA:   3'- uuGGAGC----------GGUCGUCCCUguUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 75575 0.68 0.712206
Target:  5'- cGGCCgugacguucgugUCGCCGGCGGGGGgA--GGCCGc -3'
miRNA:   3'- -UUGG------------AGCGGUCGUCCCUgUucUCGGC- -5'
16058 5' -59 NC_004065.1 + 201443 0.68 0.731376
Target:  5'- -uCCUgGUCgGGUGGGGGCucGAGCCGg -3'
miRNA:   3'- uuGGAgCGG-UCGUCCCUGuuCUCGGC- -5'
16058 5' -59 NC_004065.1 + 95166 0.68 0.750225
Target:  5'- cGCCgcCGCCGuGCAGGGuCcAGGGCCc -3'
miRNA:   3'- uUGGa-GCGGU-CGUCCCuGuUCUCGGc -5'
16058 5' -59 NC_004065.1 + 111905 0.68 0.750225
Target:  5'- cAACCUCGUCcGCGcGGcGACGAGAgacGCCa -3'
miRNA:   3'- -UUGGAGCGGuCGU-CC-CUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 64154 0.68 0.759507
Target:  5'- cGGCCUCGCCuuc-GGGACcguGAGAGaCCGu -3'
miRNA:   3'- -UUGGAGCGGucguCCCUG---UUCUC-GGC- -5'
16058 5' -59 NC_004065.1 + 167417 0.67 0.768684
Target:  5'- cGGCUgcugcCGCCGGCGGGGGCGGcGGCg- -3'
miRNA:   3'- -UUGGa----GCGGUCGUCCCUGUUcUCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.