Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16058 | 5' | -59 | NC_004065.1 | + | 136220 | 0.67 | 0.777747 |
Target: 5'- gGACCgggaGCU--CGGGGAgAGGAGCCGg -3' miRNA: 3'- -UUGGag--CGGucGUCCCUgUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 160003 | 0.67 | 0.795498 |
Target: 5'- gAGCgaCGCCAGCAGGGAguuCAGGgauuuGGUCa -3' miRNA: 3'- -UUGgaGCGGUCGUCCCU---GUUC-----UCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 177477 | 0.67 | 0.795498 |
Target: 5'- ----gCGCuCGGCGGGGGCGcacggcGGGGCCGc -3' miRNA: 3'- uuggaGCG-GUCGUCCCUGU------UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 489 | 0.67 | 0.803309 |
Target: 5'- gGGCCgcgCGCCgcguccgcgggaaGGCGGGGugAGGcGCCc -3' miRNA: 3'- -UUGGa--GCGG-------------UCGUCCCugUUCuCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 128361 | 0.67 | 0.80417 |
Target: 5'- uGCCUggugCGCCcaucggGGCuucGGcGGCGAGAGCCGg -3' miRNA: 3'- uUGGA----GCGG------UCGu--CC-CUGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 119831 | 0.67 | 0.80417 |
Target: 5'- --aCUCGCCAGCAGGaucuuCGucGAGCCc -3' miRNA: 3'- uugGAGCGGUCGUCCcu---GUu-CUCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 167641 | 0.67 | 0.80417 |
Target: 5'- gAugCUCGUCGGC-GGGAC---GGCCGu -3' miRNA: 3'- -UugGAGCGGUCGuCCCUGuucUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 162473 | 0.66 | 0.821068 |
Target: 5'- aGGCCUCGCgCGGcCGGccaGGACGAGGagcGCCa -3' miRNA: 3'- -UUGGAGCG-GUC-GUC---CCUGUUCU---CGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 76729 | 0.66 | 0.821068 |
Target: 5'- uGCaCUCcUCGGCGGGGACGGGcgcggcGCCGg -3' miRNA: 3'- uUG-GAGcGGUCGUCCCUGUUCu-----CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 99410 | 0.66 | 0.821068 |
Target: 5'- uGCgCUCG-CAGCAGGGGCccGAGCgGc -3' miRNA: 3'- uUG-GAGCgGUCGUCCCUGuuCUCGgC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 29415 | 0.66 | 0.82928 |
Target: 5'- cGCCgguggGCCagGGCAGGGAgAAGAcgguGCCGg -3' miRNA: 3'- uUGGag---CGG--UCGUCCCUgUUCU----CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 120442 | 0.66 | 0.82928 |
Target: 5'- cGGCCUgauaCGCCGcCAGGaGACAGGcGGCCa -3' miRNA: 3'- -UUGGA----GCGGUcGUCC-CUGUUC-UCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 147875 | 0.66 | 0.82928 |
Target: 5'- uGCCUCGCCAGgAGGuACAGcGuccgcGCCGc -3' miRNA: 3'- uUGGAGCGGUCgUCCcUGUU-Cu----CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 135713 | 0.66 | 0.837323 |
Target: 5'- cGCCgggcUGCgGGCGGGGAUcugguGGAGCUGu -3' miRNA: 3'- uUGGa---GCGgUCGUCCCUGu----UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 116003 | 0.66 | 0.837323 |
Target: 5'- cGCCgacgugCGCC-GCGGGGGCAGcucucuGCCGa -3' miRNA: 3'- uUGGa-----GCGGuCGUCCCUGUUcu----CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 139710 | 0.66 | 0.837323 |
Target: 5'- cGCgCUUGCCGGaugAGGGACGu-GGCCGa -3' miRNA: 3'- uUG-GAGCGGUCg--UCCCUGUucUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 173318 | 0.66 | 0.837323 |
Target: 5'- cGCCgcCGCCGcuGCGGcGGAgAAGAGUCGu -3' miRNA: 3'- uUGGa-GCGGU--CGUC-CCUgUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 200018 | 0.66 | 0.845192 |
Target: 5'- cACCgcgGUCGuCAGGGGCAGGuGCCGu -3' miRNA: 3'- uUGGag-CGGUcGUCCCUGUUCuCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 152312 | 0.66 | 0.845192 |
Target: 5'- cGGCggUGCCGGCGGGGACGAugacGGCUu -3' miRNA: 3'- -UUGgaGCGGUCGUCCCUGUUc---UCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 87606 | 0.66 | 0.845192 |
Target: 5'- gAGCCggcgCGCCGGCAGGcGA-AAGAugGCCc -3' miRNA: 3'- -UUGGa---GCGGUCGUCC-CUgUUCU--CGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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