miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 5' -59 NC_004065.1 + 120442 0.66 0.82928
Target:  5'- cGGCCUgauaCGCCGcCAGGaGACAGGcGGCCa -3'
miRNA:   3'- -UUGGA----GCGGUcGUCC-CUGUUC-UCGGc -5'
16058 5' -59 NC_004065.1 + 147875 0.66 0.82928
Target:  5'- uGCCUCGCCAGgAGGuACAGcGuccgcGCCGc -3'
miRNA:   3'- uUGGAGCGGUCgUCCcUGUU-Cu----CGGC- -5'
16058 5' -59 NC_004065.1 + 76729 0.66 0.821068
Target:  5'- uGCaCUCcUCGGCGGGGACGGGcgcggcGCCGg -3'
miRNA:   3'- uUG-GAGcGGUCGUCCCUGUUCu-----CGGC- -5'
16058 5' -59 NC_004065.1 + 162473 0.66 0.821068
Target:  5'- aGGCCUCGCgCGGcCGGccaGGACGAGGagcGCCa -3'
miRNA:   3'- -UUGGAGCG-GUC-GUC---CCUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 99410 0.66 0.821068
Target:  5'- uGCgCUCG-CAGCAGGGGCccGAGCgGc -3'
miRNA:   3'- uUG-GAGCgGUCGUCCCUGuuCUCGgC- -5'
16058 5' -59 NC_004065.1 + 167641 0.67 0.80417
Target:  5'- gAugCUCGUCGGC-GGGAC---GGCCGu -3'
miRNA:   3'- -UugGAGCGGUCGuCCCUGuucUCGGC- -5'
16058 5' -59 NC_004065.1 + 119831 0.67 0.80417
Target:  5'- --aCUCGCCAGCAGGaucuuCGucGAGCCc -3'
miRNA:   3'- uugGAGCGGUCGUCCcu---GUu-CUCGGc -5'
16058 5' -59 NC_004065.1 + 128361 0.67 0.80417
Target:  5'- uGCCUggugCGCCcaucggGGCuucGGcGGCGAGAGCCGg -3'
miRNA:   3'- uUGGA----GCGG------UCGu--CC-CUGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 489 0.67 0.803309
Target:  5'- gGGCCgcgCGCCgcguccgcgggaaGGCGGGGugAGGcGCCc -3'
miRNA:   3'- -UUGGa--GCGG-------------UCGUCCCugUUCuCGGc -5'
16058 5' -59 NC_004065.1 + 160003 0.67 0.795498
Target:  5'- gAGCgaCGCCAGCAGGGAguuCAGGgauuuGGUCa -3'
miRNA:   3'- -UUGgaGCGGUCGUCCCU---GUUC-----UCGGc -5'
16058 5' -59 NC_004065.1 + 177477 0.67 0.795498
Target:  5'- ----gCGCuCGGCGGGGGCGcacggcGGGGCCGc -3'
miRNA:   3'- uuggaGCG-GUCGUCCCUGU------UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 136220 0.67 0.777747
Target:  5'- gGACCgggaGCU--CGGGGAgAGGAGCCGg -3'
miRNA:   3'- -UUGGag--CGGucGUCCCUgUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 167417 0.67 0.768684
Target:  5'- cGGCUgcugcCGCCGGCGGGGGCGGcGGCg- -3'
miRNA:   3'- -UUGGa----GCGGUCGUCCCUGUUcUCGgc -5'
16058 5' -59 NC_004065.1 + 64154 0.68 0.759507
Target:  5'- cGGCCUCGCCuuc-GGGACcguGAGAGaCCGu -3'
miRNA:   3'- -UUGGAGCGGucguCCCUG---UUCUC-GGC- -5'
16058 5' -59 NC_004065.1 + 111905 0.68 0.750225
Target:  5'- cAACCUCGUCcGCGcGGcGACGAGAgacGCCa -3'
miRNA:   3'- -UUGGAGCGGuCGU-CC-CUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 95166 0.68 0.750225
Target:  5'- cGCCgcCGCCGuGCAGGGuCcAGGGCCc -3'
miRNA:   3'- uUGGa-GCGGU-CGUCCCuGuUCUCGGc -5'
16058 5' -59 NC_004065.1 + 201443 0.68 0.731376
Target:  5'- -uCCUgGUCgGGUGGGGGCucGAGCCGg -3'
miRNA:   3'- uuGGAgCGG-UCGUCCCUGuuCUCGGC- -5'
16058 5' -59 NC_004065.1 + 75575 0.68 0.712206
Target:  5'- cGGCCgugacguucgugUCGCCGGCGGGGGgA--GGCCGc -3'
miRNA:   3'- -UUGG------------AGCGGUCGUCCCUgUucUCGGC- -5'
16058 5' -59 NC_004065.1 + 223500 0.68 0.712206
Target:  5'- gGACCagcagaUCGCCGGuCAGGGGaucuAGuGCCGg -3'
miRNA:   3'- -UUGG------AGCGGUC-GUCCCUgu--UCuCGGC- -5'
16058 5' -59 NC_004065.1 + 52820 0.68 0.712206
Target:  5'- -cCCUCGgcaaaagugaCCGGUAGGGG--AGAGCCGa -3'
miRNA:   3'- uuGGAGC----------GGUCGUCCCUguUCUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.