Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16058 | 5' | -59 | NC_004065.1 | + | 46483 | 0.69 | 0.692779 |
Target: 5'- gAACCUCGCCGGCAucaccaagauGucGCGcGAGCCGu -3' miRNA: 3'- -UUGGAGCGGUCGU----------CccUGUuCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 199447 | 0.7 | 0.653422 |
Target: 5'- aGGCgCUCGCC-GCGGcGGaACGGGGGCUGg -3' miRNA: 3'- -UUG-GAGCGGuCGUC-CC-UGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 41626 | 0.7 | 0.643524 |
Target: 5'- -cUCUCGCCcGCA-GGACGAGAGCg- -3' miRNA: 3'- uuGGAGCGGuCGUcCCUGUUCUCGgc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 112461 | 0.7 | 0.623709 |
Target: 5'- cGCCUgaGCCAGCugacGGGACAGGAGaucCCa -3' miRNA: 3'- uUGGAg-CGGUCGu---CCCUGUUCUC---GGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 187310 | 0.7 | 0.623709 |
Target: 5'- uGCUgCGCCGGUAGGGGgGGaGGCCGa -3' miRNA: 3'- uUGGaGCGGUCGUCCCUgUUcUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 19443 | 0.71 | 0.597993 |
Target: 5'- cACCgCGCUgcuggcgaugagcguGGUGGGGACGGGAGUCGg -3' miRNA: 3'- uUGGaGCGG---------------UCGUCCCUGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 107764 | 0.71 | 0.594048 |
Target: 5'- uGAgCUgGCCGGCGGGGGguUAGGAcGCCGc -3' miRNA: 3'- -UUgGAgCGGUCGUCCCU--GUUCU-CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 143263 | 0.71 | 0.564621 |
Target: 5'- gGACC-CG-CGGCGGGGGCGgcagcuucaAGGGCCGa -3' miRNA: 3'- -UUGGaGCgGUCGUCCCUGU---------UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 119594 | 0.71 | 0.545215 |
Target: 5'- uGGCCUggacgugcaggaCGCCGGCGGcGGAgGAGAcGCCGu -3' miRNA: 3'- -UUGGA------------GCGGUCGUC-CCUgUUCU-CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 21964 | 0.71 | 0.545215 |
Target: 5'- gGGCCgUCGUCGGCA-GGACGgugAGGGCCGc -3' miRNA: 3'- -UUGG-AGCGGUCGUcCCUGU---UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 6254 | 0.71 | 0.545215 |
Target: 5'- -uCCugUCGUgCGGCGGGGACGagagGGAGCCGa -3' miRNA: 3'- uuGG--AGCG-GUCGUCCCUGU----UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 87507 | 1.06 | 0.003411 |
Target: 5'- cAACCUCGCCAGCAGGGACAAGAGCCGu -3' miRNA: 3'- -UUGGAGCGGUCGUCCCUGUUCUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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