miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 5' -59 NC_004065.1 + 109824 0.66 0.852118
Target:  5'- -cCCUCGUCgccguccugcugcGGCGGGGggccaucgcGCAGGuGCCGg -3'
miRNA:   3'- uuGGAGCGG-------------UCGUCCC---------UGUUCuCGGC- -5'
16058 5' -59 NC_004065.1 + 111905 0.68 0.750225
Target:  5'- cAACCUCGUCcGCGcGGcGACGAGAgacGCCa -3'
miRNA:   3'- -UUGGAGCGGuCGU-CC-CUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 112461 0.7 0.623709
Target:  5'- cGCCUgaGCCAGCugacGGGACAGGAGaucCCa -3'
miRNA:   3'- uUGGAg-CGGUCGu---CCCUGUUCUC---GGc -5'
16058 5' -59 NC_004065.1 + 114783 0.66 0.852879
Target:  5'- gGAUCUCgaaGCCGGCgagcguacgGGGGGCAAGAGaacgCGg -3'
miRNA:   3'- -UUGGAG---CGGUCG---------UCCCUGUUCUCg---GC- -5'
16058 5' -59 NC_004065.1 + 116003 0.66 0.837323
Target:  5'- cGCCgacgugCGCC-GCGGGGGCAGcucucuGCCGa -3'
miRNA:   3'- uUGGa-----GCGGuCGUCCCUGUUcu----CGGC- -5'
16058 5' -59 NC_004065.1 + 119594 0.71 0.545215
Target:  5'- uGGCCUggacgugcaggaCGCCGGCGGcGGAgGAGAcGCCGu -3'
miRNA:   3'- -UUGGA------------GCGGUCGUC-CCUgUUCU-CGGC- -5'
16058 5' -59 NC_004065.1 + 119831 0.67 0.80417
Target:  5'- --aCUCGCCAGCAGGaucuuCGucGAGCCc -3'
miRNA:   3'- uugGAGCGGUCGUCCcu---GUu-CUCGGc -5'
16058 5' -59 NC_004065.1 + 120442 0.66 0.82928
Target:  5'- cGGCCUgauaCGCCGcCAGGaGACAGGcGGCCa -3'
miRNA:   3'- -UUGGA----GCGGUcGUCC-CUGUUC-UCGGc -5'
16058 5' -59 NC_004065.1 + 126708 0.66 0.852879
Target:  5'- cGACCUaCGCCuGCGGcGACcgcuGAGCCu -3'
miRNA:   3'- -UUGGA-GCGGuCGUCcCUGuu--CUCGGc -5'
16058 5' -59 NC_004065.1 + 128361 0.67 0.80417
Target:  5'- uGCCUggugCGCCcaucggGGCuucGGcGGCGAGAGCCGg -3'
miRNA:   3'- uUGGA----GCGG------UCGu--CC-CUGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 129563 0.66 0.852879
Target:  5'- gGGCCgauGCCGGUguuccGGGugGAGAuGCCGg -3'
miRNA:   3'- -UUGGag-CGGUCGu----CCCugUUCU-CGGC- -5'
16058 5' -59 NC_004065.1 + 135713 0.66 0.837323
Target:  5'- cGCCgggcUGCgGGCGGGGAUcugguGGAGCUGu -3'
miRNA:   3'- uUGGa---GCGgUCGUCCCUGu----UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 136097 0.66 0.845192
Target:  5'- gGACCUgggcagggUGCaaugaAGCGGGGAcCGGGAGCuCGg -3'
miRNA:   3'- -UUGGA--------GCGg----UCGUCCCU-GUUCUCG-GC- -5'
16058 5' -59 NC_004065.1 + 136220 0.67 0.777747
Target:  5'- gGACCgggaGCU--CGGGGAgAGGAGCCGg -3'
miRNA:   3'- -UUGGag--CGGucGUCCCUgUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 139710 0.66 0.837323
Target:  5'- cGCgCUUGCCGGaugAGGGACGu-GGCCGa -3'
miRNA:   3'- uUG-GAGCGGUCg--UCCCUGUucUCGGC- -5'
16058 5' -59 NC_004065.1 + 143263 0.71 0.564621
Target:  5'- gGACC-CG-CGGCGGGGGCGgcagcuucaAGGGCCGa -3'
miRNA:   3'- -UUGGaGCgGUCGUCCCUGU---------UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 147483 0.66 0.858149
Target:  5'- cACCauguggUGCCGGCGGGGaACGucauccgcauguucGGGGCCa -3'
miRNA:   3'- uUGGa-----GCGGUCGUCCC-UGU--------------UCUCGGc -5'
16058 5' -59 NC_004065.1 + 147875 0.66 0.82928
Target:  5'- uGCCUCGCCAGgAGGuACAGcGuccgcGCCGc -3'
miRNA:   3'- uUGGAGCGGUCgUCCcUGUU-Cu----CGGC- -5'
16058 5' -59 NC_004065.1 + 152312 0.66 0.845192
Target:  5'- cGGCggUGCCGGCGGGGACGAugacGGCUu -3'
miRNA:   3'- -UUGgaGCGGUCGUCCCUGUUc---UCGGc -5'
16058 5' -59 NC_004065.1 + 160003 0.67 0.795498
Target:  5'- gAGCgaCGCCAGCAGGGAguuCAGGgauuuGGUCa -3'
miRNA:   3'- -UUGgaGCGGUCGUCCCU---GUUC-----UCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.