miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 5' -59 NC_004065.1 + 223500 0.68 0.712206
Target:  5'- gGACCagcagaUCGCCGGuCAGGGGaucuAGuGCCGg -3'
miRNA:   3'- -UUGG------AGCGGUC-GUCCCUgu--UCuCGGC- -5'
16058 5' -59 NC_004065.1 + 201443 0.68 0.731376
Target:  5'- -uCCUgGUCgGGUGGGGGCucGAGCCGg -3'
miRNA:   3'- uuGGAgCGG-UCGUCCCUGuuCUCGGC- -5'
16058 5' -59 NC_004065.1 + 200018 0.66 0.845192
Target:  5'- cACCgcgGUCGuCAGGGGCAGGuGCCGu -3'
miRNA:   3'- uUGGag-CGGUcGUCCCUGUUCuCGGC- -5'
16058 5' -59 NC_004065.1 + 199447 0.7 0.653422
Target:  5'- aGGCgCUCGCC-GCGGcGGaACGGGGGCUGg -3'
miRNA:   3'- -UUG-GAGCGGuCGUC-CC-UGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 197147 0.66 0.852118
Target:  5'- aGACgCUCGCCGGCgcgccucucgaccAGGGACGccAGCUc -3'
miRNA:   3'- -UUG-GAGCGGUCG-------------UCCCUGUucUCGGc -5'
16058 5' -59 NC_004065.1 + 187310 0.7 0.623709
Target:  5'- uGCUgCGCCGGUAGGGGgGGaGGCCGa -3'
miRNA:   3'- uUGGaGCGGUCGUCCCUgUUcUCGGC- -5'
16058 5' -59 NC_004065.1 + 177477 0.67 0.795498
Target:  5'- ----gCGCuCGGCGGGGGCGcacggcGGGGCCGc -3'
miRNA:   3'- uuggaGCG-GUCGUCCCUGU------UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 173318 0.66 0.837323
Target:  5'- cGCCgcCGCCGcuGCGGcGGAgAAGAGUCGu -3'
miRNA:   3'- uUGGa-GCGGU--CGUC-CCUgUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 168093 0.66 0.845192
Target:  5'- cGCaUCGCCGGgcuccccguCAGGGACGAGAugcGCCc -3'
miRNA:   3'- uUGgAGCGGUC---------GUCCCUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 167641 0.67 0.80417
Target:  5'- gAugCUCGUCGGC-GGGAC---GGCCGu -3'
miRNA:   3'- -UugGAGCGGUCGuCCCUGuucUCGGC- -5'
16058 5' -59 NC_004065.1 + 167417 0.67 0.768684
Target:  5'- cGGCUgcugcCGCCGGCGGGGGCGGcGGCg- -3'
miRNA:   3'- -UUGGa----GCGGUCGUCCCUGUUcUCGgc -5'
16058 5' -59 NC_004065.1 + 162473 0.66 0.821068
Target:  5'- aGGCCUCGCgCGGcCGGccaGGACGAGGagcGCCa -3'
miRNA:   3'- -UUGGAGCG-GUC-GUC---CCUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 160003 0.67 0.795498
Target:  5'- gAGCgaCGCCAGCAGGGAguuCAGGgauuuGGUCa -3'
miRNA:   3'- -UUGgaGCGGUCGUCCCU---GUUC-----UCGGc -5'
16058 5' -59 NC_004065.1 + 152312 0.66 0.845192
Target:  5'- cGGCggUGCCGGCGGGGACGAugacGGCUu -3'
miRNA:   3'- -UUGgaGCGGUCGUCCCUGUUc---UCGGc -5'
16058 5' -59 NC_004065.1 + 147875 0.66 0.82928
Target:  5'- uGCCUCGCCAGgAGGuACAGcGuccgcGCCGc -3'
miRNA:   3'- uUGGAGCGGUCgUCCcUGUU-Cu----CGGC- -5'
16058 5' -59 NC_004065.1 + 147483 0.66 0.858149
Target:  5'- cACCauguggUGCCGGCGGGGaACGucauccgcauguucGGGGCCa -3'
miRNA:   3'- uUGGa-----GCGGUCGUCCC-UGU--------------UCUCGGc -5'
16058 5' -59 NC_004065.1 + 143263 0.71 0.564621
Target:  5'- gGACC-CG-CGGCGGGGGCGgcagcuucaAGGGCCGa -3'
miRNA:   3'- -UUGGaGCgGUCGUCCCUGU---------UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 139710 0.66 0.837323
Target:  5'- cGCgCUUGCCGGaugAGGGACGu-GGCCGa -3'
miRNA:   3'- uUG-GAGCGGUCg--UCCCUGUucUCGGC- -5'
16058 5' -59 NC_004065.1 + 136220 0.67 0.777747
Target:  5'- gGACCgggaGCU--CGGGGAgAGGAGCCGg -3'
miRNA:   3'- -UUGGag--CGGucGUCCCUgUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 136097 0.66 0.845192
Target:  5'- gGACCUgggcagggUGCaaugaAGCGGGGAcCGGGAGCuCGg -3'
miRNA:   3'- -UUGGA--------GCGg----UCGUCCCU-GUUCUCG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.