Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16058 | 5' | -59 | NC_004065.1 | + | 139710 | 0.66 | 0.837323 |
Target: 5'- cGCgCUUGCCGGaugAGGGACGu-GGCCGa -3' miRNA: 3'- uUG-GAGCGGUCg--UCCCUGUucUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 128361 | 0.67 | 0.80417 |
Target: 5'- uGCCUggugCGCCcaucggGGCuucGGcGGCGAGAGCCGg -3' miRNA: 3'- uUGGA----GCGG------UCGu--CC-CUGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 119831 | 0.67 | 0.80417 |
Target: 5'- --aCUCGCCAGCAGGaucuuCGucGAGCCc -3' miRNA: 3'- uugGAGCGGUCGUCCcu---GUu-CUCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 167641 | 0.67 | 0.80417 |
Target: 5'- gAugCUCGUCGGC-GGGAC---GGCCGu -3' miRNA: 3'- -UugGAGCGGUCGuCCCUGuucUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 99410 | 0.66 | 0.821068 |
Target: 5'- uGCgCUCG-CAGCAGGGGCccGAGCgGc -3' miRNA: 3'- uUG-GAGCgGUCGUCCCUGuuCUCGgC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 76729 | 0.66 | 0.821068 |
Target: 5'- uGCaCUCcUCGGCGGGGACGGGcgcggcGCCGg -3' miRNA: 3'- uUG-GAGcGGUCGUCCCUGUUCu-----CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 162473 | 0.66 | 0.821068 |
Target: 5'- aGGCCUCGCgCGGcCGGccaGGACGAGGagcGCCa -3' miRNA: 3'- -UUGGAGCG-GUC-GUC---CCUGUUCU---CGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 29415 | 0.66 | 0.82928 |
Target: 5'- cGCCgguggGCCagGGCAGGGAgAAGAcgguGCCGg -3' miRNA: 3'- uUGGag---CGG--UCGUCCCUgUUCU----CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 135713 | 0.66 | 0.837323 |
Target: 5'- cGCCgggcUGCgGGCGGGGAUcugguGGAGCUGu -3' miRNA: 3'- uUGGa---GCGgUCGUCCCUGu----UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 489 | 0.67 | 0.803309 |
Target: 5'- gGGCCgcgCGCCgcguccgcgggaaGGCGGGGugAGGcGCCc -3' miRNA: 3'- -UUGGa--GCGG-------------UCGUCCCugUUCuCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 201443 | 0.68 | 0.731376 |
Target: 5'- -uCCUgGUCgGGUGGGGGCucGAGCCGg -3' miRNA: 3'- uuGGAgCGG-UCGUCCCUGuuCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 75575 | 0.68 | 0.712206 |
Target: 5'- cGGCCgugacguucgugUCGCCGGCGGGGGgA--GGCCGc -3' miRNA: 3'- -UUGG------------AGCGGUCGUCCCUgUucUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 21964 | 0.71 | 0.545215 |
Target: 5'- gGGCCgUCGUCGGCA-GGACGgugAGGGCCGc -3' miRNA: 3'- -UUGG-AGCGGUCGUcCCUGU---UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 107764 | 0.71 | 0.594048 |
Target: 5'- uGAgCUgGCCGGCGGGGGguUAGGAcGCCGc -3' miRNA: 3'- -UUgGAgCGGUCGUCCCU--GUUCU-CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 19443 | 0.71 | 0.597993 |
Target: 5'- cACCgCGCUgcuggcgaugagcguGGUGGGGACGGGAGUCGg -3' miRNA: 3'- uUGGaGCGG---------------UCGUCCCUGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 187310 | 0.7 | 0.623709 |
Target: 5'- uGCUgCGCCGGUAGGGGgGGaGGCCGa -3' miRNA: 3'- uUGGaGCGGUCGUCCCUgUUcUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 41626 | 0.7 | 0.643524 |
Target: 5'- -cUCUCGCCcGCA-GGACGAGAGCg- -3' miRNA: 3'- uuGGAGCGGuCGUcCCUGUUCUCGgc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 46483 | 0.69 | 0.692779 |
Target: 5'- gAACCUCGCCGGCAucaccaagauGucGCGcGAGCCGu -3' miRNA: 3'- -UUGGAGCGGUCGU----------CccUGUuCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 52820 | 0.68 | 0.712206 |
Target: 5'- -cCCUCGgcaaaagugaCCGGUAGGGG--AGAGCCGa -3' miRNA: 3'- uuGGAGC----------GGUCGUCCCUguUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 223500 | 0.68 | 0.712206 |
Target: 5'- gGACCagcagaUCGCCGGuCAGGGGaucuAGuGCCGg -3' miRNA: 3'- -UUGG------AGCGGUC-GUCCCUgu--UCuCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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