Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16058 | 5' | -59 | NC_004065.1 | + | 19443 | 0.71 | 0.597993 |
Target: 5'- cACCgCGCUgcuggcgaugagcguGGUGGGGACGGGAGUCGg -3' miRNA: 3'- uUGGaGCGG---------------UCGUCCCUGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 187310 | 0.7 | 0.623709 |
Target: 5'- uGCUgCGCCGGUAGGGGgGGaGGCCGa -3' miRNA: 3'- uUGGaGCGGUCGUCCCUgUUcUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 41626 | 0.7 | 0.643524 |
Target: 5'- -cUCUCGCCcGCA-GGACGAGAGCg- -3' miRNA: 3'- uuGGAGCGGuCGUcCCUGUUCUCGgc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 46483 | 0.69 | 0.692779 |
Target: 5'- gAACCUCGCCGGCAucaccaagauGucGCGcGAGCCGu -3' miRNA: 3'- -UUGGAGCGGUCGU----------CccUGUuCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 52820 | 0.68 | 0.712206 |
Target: 5'- -cCCUCGgcaaaagugaCCGGUAGGGG--AGAGCCGa -3' miRNA: 3'- uuGGAGC----------GGUCGUCCCUguUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 119831 | 0.67 | 0.80417 |
Target: 5'- --aCUCGCCAGCAGGaucuuCGucGAGCCc -3' miRNA: 3'- uugGAGCGGUCGUCCcu---GUu-CUCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 128361 | 0.67 | 0.80417 |
Target: 5'- uGCCUggugCGCCcaucggGGCuucGGcGGCGAGAGCCGg -3' miRNA: 3'- uUGGA----GCGG------UCGu--CC-CUGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 489 | 0.67 | 0.803309 |
Target: 5'- gGGCCgcgCGCCgcguccgcgggaaGGCGGGGugAGGcGCCc -3' miRNA: 3'- -UUGGa--GCGG-------------UCGUCCCugUUCuCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 201443 | 0.68 | 0.731376 |
Target: 5'- -uCCUgGUCgGGUGGGGGCucGAGCCGg -3' miRNA: 3'- uuGGAgCGG-UCGUCCCUGuuCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 75575 | 0.68 | 0.712206 |
Target: 5'- cGGCCgugacguucgugUCGCCGGCGGGGGgA--GGCCGc -3' miRNA: 3'- -UUGG------------AGCGGUCGUCCCUgUucUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 223500 | 0.68 | 0.712206 |
Target: 5'- gGACCagcagaUCGCCGGuCAGGGGaucuAGuGCCGg -3' miRNA: 3'- -UUGG------AGCGGUC-GUCCCUgu--UCuCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 167417 | 0.67 | 0.768684 |
Target: 5'- cGGCUgcugcCGCCGGCGGGGGCGGcGGCg- -3' miRNA: 3'- -UUGGa----GCGGUCGUCCCUGUUcUCGgc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 64154 | 0.68 | 0.759507 |
Target: 5'- cGGCCUCGCCuuc-GGGACcguGAGAGaCCGu -3' miRNA: 3'- -UUGGAGCGGucguCCCUG---UUCUC-GGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 111905 | 0.68 | 0.750225 |
Target: 5'- cAACCUCGUCcGCGcGGcGACGAGAgacGCCa -3' miRNA: 3'- -UUGGAGCGGuCGU-CC-CUGUUCU---CGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 95166 | 0.68 | 0.750225 |
Target: 5'- cGCCgcCGCCGuGCAGGGuCcAGGGCCc -3' miRNA: 3'- uUGGa-GCGGU-CGUCCCuGuUCUCGGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 199447 | 0.7 | 0.653422 |
Target: 5'- aGGCgCUCGCC-GCGGcGGaACGGGGGCUGg -3' miRNA: 3'- -UUG-GAGCGGuCGUC-CC-UGUUCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 112461 | 0.7 | 0.623709 |
Target: 5'- cGCCUgaGCCAGCugacGGGACAGGAGaucCCa -3' miRNA: 3'- uUGGAg-CGGUCGu---CCCUGUUCUC---GGc -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 143263 | 0.71 | 0.564621 |
Target: 5'- gGACC-CG-CGGCGGGGGCGgcagcuucaAGGGCCGa -3' miRNA: 3'- -UUGGaGCgGUCGUCCCUGU---------UCUCGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 119594 | 0.71 | 0.545215 |
Target: 5'- uGGCCUggacgugcaggaCGCCGGCGGcGGAgGAGAcGCCGu -3' miRNA: 3'- -UUGGA------------GCGGUCGUC-CCUgUUCU-CGGC- -5' |
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16058 | 5' | -59 | NC_004065.1 | + | 147483 | 0.66 | 0.858149 |
Target: 5'- cACCauguggUGCCGGCGGGGaACGucauccgcauguucGGGGCCa -3' miRNA: 3'- uUGGa-----GCGGUCGUCCC-UGU--------------UCUCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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