miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 5' -59 NC_004065.1 + 6254 0.71 0.545215
Target:  5'- -uCCugUCGUgCGGCGGGGACGagagGGAGCCGa -3'
miRNA:   3'- uuGG--AGCG-GUCGUCCCUGU----UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 168093 0.66 0.845192
Target:  5'- cGCaUCGCCGGgcuccccguCAGGGACGAGAugcGCCc -3'
miRNA:   3'- uUGgAGCGGUC---------GUCCCUGUUCU---CGGc -5'
16058 5' -59 NC_004065.1 + 126708 0.66 0.852879
Target:  5'- cGACCUaCGCCuGCGGcGACcgcuGAGCCu -3'
miRNA:   3'- -UUGGA-GCGGuCGUCcCUGuu--CUCGGc -5'
16058 5' -59 NC_004065.1 + 147483 0.66 0.858149
Target:  5'- cACCauguggUGCCGGCGGGGaACGucauccgcauguucGGGGCCa -3'
miRNA:   3'- uUGGa-----GCGGUCGUCCC-UGU--------------UCUCGGc -5'
16058 5' -59 NC_004065.1 + 199447 0.7 0.653422
Target:  5'- aGGCgCUCGCC-GCGGcGGaACGGGGGCUGg -3'
miRNA:   3'- -UUG-GAGCGGuCGUC-CC-UGUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 95166 0.68 0.750225
Target:  5'- cGCCgcCGCCGuGCAGGGuCcAGGGCCc -3'
miRNA:   3'- uUGGa-GCGGU-CGUCCCuGuUCUCGGc -5'
16058 5' -59 NC_004065.1 + 64154 0.68 0.759507
Target:  5'- cGGCCUCGCCuuc-GGGACcguGAGAGaCCGu -3'
miRNA:   3'- -UUGGAGCGGucguCCCUG---UUCUC-GGC- -5'
16058 5' -59 NC_004065.1 + 167417 0.67 0.768684
Target:  5'- cGGCUgcugcCGCCGGCGGGGGCGGcGGCg- -3'
miRNA:   3'- -UUGGa----GCGGUCGUCCCUGUUcUCGgc -5'
16058 5' -59 NC_004065.1 + 177477 0.67 0.795498
Target:  5'- ----gCGCuCGGCGGGGGCGcacggcGGGGCCGc -3'
miRNA:   3'- uuggaGCG-GUCGUCCCUGU------UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 136097 0.66 0.845192
Target:  5'- gGACCUgggcagggUGCaaugaAGCGGGGAcCGGGAGCuCGg -3'
miRNA:   3'- -UUGGA--------GCGg----UCGUCCCU-GUUCUCG-GC- -5'
16058 5' -59 NC_004065.1 + 120442 0.66 0.82928
Target:  5'- cGGCCUgauaCGCCGcCAGGaGACAGGcGGCCa -3'
miRNA:   3'- -UUGGA----GCGGUcGUCC-CUGUUC-UCGGc -5'
16058 5' -59 NC_004065.1 + 160003 0.67 0.795498
Target:  5'- gAGCgaCGCCAGCAGGGAguuCAGGgauuuGGUCa -3'
miRNA:   3'- -UUGgaGCGGUCGUCCCU---GUUC-----UCGGc -5'
16058 5' -59 NC_004065.1 + 119594 0.71 0.545215
Target:  5'- uGGCCUggacgugcaggaCGCCGGCGGcGGAgGAGAcGCCGu -3'
miRNA:   3'- -UUGGA------------GCGGUCGUC-CCUgUUCU-CGGC- -5'
16058 5' -59 NC_004065.1 + 173318 0.66 0.837323
Target:  5'- cGCCgcCGCCGcuGCGGcGGAgAAGAGUCGu -3'
miRNA:   3'- uUGGa-GCGGU--CGUC-CCUgUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 143263 0.71 0.564621
Target:  5'- gGACC-CG-CGGCGGGGGCGgcagcuucaAGGGCCGa -3'
miRNA:   3'- -UUGGaGCgGUCGUCCCUGU---------UCUCGGC- -5'
16058 5' -59 NC_004065.1 + 136220 0.67 0.777747
Target:  5'- gGACCgggaGCU--CGGGGAgAGGAGCCGg -3'
miRNA:   3'- -UUGGag--CGGucGUCCCUgUUCUCGGC- -5'
16058 5' -59 NC_004065.1 + 87606 0.66 0.845192
Target:  5'- gAGCCggcgCGCCGGCAGGcGA-AAGAugGCCc -3'
miRNA:   3'- -UUGGa---GCGGUCGUCC-CUgUUCU--CGGc -5'
16058 5' -59 NC_004065.1 + 129563 0.66 0.852879
Target:  5'- gGGCCgauGCCGGUguuccGGGugGAGAuGCCGg -3'
miRNA:   3'- -UUGGag-CGGUCGu----CCCugUUCU-CGGC- -5'
16058 5' -59 NC_004065.1 + 112461 0.7 0.623709
Target:  5'- cGCCUgaGCCAGCugacGGGACAGGAGaucCCa -3'
miRNA:   3'- uUGGAg-CGGUCGu---CCCUGUUCUC---GGc -5'
16058 5' -59 NC_004065.1 + 111905 0.68 0.750225
Target:  5'- cAACCUCGUCcGCGcGGcGACGAGAgacGCCa -3'
miRNA:   3'- -UUGGAGCGGuCGU-CC-CUGUUCU---CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.