miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 3' -52 NC_004065.1 + 123526 0.66 0.996904
Target:  5'- cGGGCuGGuGugGUCGUACAgGGuGGCCa -3'
miRNA:   3'- -CUCG-CCuCuuUAGCAUGUaCC-CUGGc -5'
16059 3' -52 NC_004065.1 + 33176 0.66 0.996594
Target:  5'- cGAGCGGAcuGGAggaaccgaagugcacGUCGUACAUGaGGuCgCGg -3'
miRNA:   3'- -CUCGCCU--CUU---------------UAGCAUGUAC-CCuG-GC- -5'
16059 3' -52 NC_004065.1 + 105076 0.66 0.996374
Target:  5'- cAGCGGGGcAGGUCGUACA-GGauaGGCgCGg -3'
miRNA:   3'- cUCGCCUC-UUUAGCAUGUaCC---CUG-GC- -5'
16059 3' -52 NC_004065.1 + 89833 0.66 0.996374
Target:  5'- cGGgGGAGAAGgcCGUgGCGUaGGGGCUGa -3'
miRNA:   3'- cUCgCCUCUUUa-GCA-UGUA-CCCUGGC- -5'
16059 3' -52 NC_004065.1 + 58800 0.66 0.996374
Target:  5'- aGGgGGAuGGAGUUGUugAUGGucuuGGCCGa -3'
miRNA:   3'- cUCgCCU-CUUUAGCAugUACC----CUGGC- -5'
16059 3' -52 NC_004065.1 + 95858 0.66 0.996374
Target:  5'- cAGaCGGAGccGUCcUGCGUGuGGACCa -3'
miRNA:   3'- cUC-GCCUCuuUAGcAUGUAC-CCUGGc -5'
16059 3' -52 NC_004065.1 + 71850 0.66 0.995771
Target:  5'- aGAGCGGAGGGAUCcGgaaaGCGcGGccGACCa -3'
miRNA:   3'- -CUCGCCUCUUUAG-Ca---UGUaCC--CUGGc -5'
16059 3' -52 NC_004065.1 + 187022 0.66 0.995089
Target:  5'- cGAGUacgaGGAGAccUCGUu--UGGGACCa -3'
miRNA:   3'- -CUCG----CCUCUuuAGCAuguACCCUGGc -5'
16059 3' -52 NC_004065.1 + 18585 0.66 0.995089
Target:  5'- gGAGCGGAGggGccUCGUugGUGuugucgucACCGc -3'
miRNA:   3'- -CUCGCCUCuuU--AGCAugUACcc------UGGC- -5'
16059 3' -52 NC_004065.1 + 144336 0.66 0.995089
Target:  5'- uAGCGGAuGAuGggGUACAUGGcGCCGc -3'
miRNA:   3'- cUCGCCU-CUuUagCAUGUACCcUGGC- -5'
16059 3' -52 NC_004065.1 + 136194 0.66 0.99432
Target:  5'- gGAGCucGGGGAGGgaagcCGgACA-GGGACCGg -3'
miRNA:   3'- -CUCG--CCUCUUUa----GCaUGUaCCCUGGC- -5'
16059 3' -52 NC_004065.1 + 136130 0.66 0.99432
Target:  5'- gGAGCucGGGGAGGgaagcCGgACA-GGGACCGg -3'
miRNA:   3'- -CUCG--CCUCUUUa----GCaUGUaCCCUGGC- -5'
16059 3' -52 NC_004065.1 + 136162 0.66 0.99432
Target:  5'- gGAGCucGGGGAGGgaagcCGgACA-GGGACCGg -3'
miRNA:   3'- -CUCG--CCUCUUUa----GCaUGUaCCCUGGC- -5'
16059 3' -52 NC_004065.1 + 161024 0.67 0.992492
Target:  5'- aGGCGGcaucgaCGUGCA-GGGGCCGg -3'
miRNA:   3'- cUCGCCucuuuaGCAUGUaCCCUGGC- -5'
16059 3' -52 NC_004065.1 + 136768 0.67 0.99239
Target:  5'- -uGCGGGGGGAgagCGUgggggauGCGggGGGGCCa -3'
miRNA:   3'- cuCGCCUCUUUa--GCA-------UGUa-CCCUGGc -5'
16059 3' -52 NC_004065.1 + 6241 0.67 0.991417
Target:  5'- cGGCuGGAGGuaguccuGUCGUGCGgcgGGGACg- -3'
miRNA:   3'- cUCG-CCUCUu------UAGCAUGUa--CCCUGgc -5'
16059 3' -52 NC_004065.1 + 185222 0.67 0.991417
Target:  5'- -cGCGGAGAAucCGUAUcgGaGGACaCGu -3'
miRNA:   3'- cuCGCCUCUUuaGCAUGuaC-CCUG-GC- -5'
16059 3' -52 NC_004065.1 + 203002 0.67 0.991304
Target:  5'- cGGGUGGAGGgugguaaGAUUGgcgGCGUGGaGGCUGu -3'
miRNA:   3'- -CUCGCCUCU-------UUAGCa--UGUACC-CUGGC- -5'
16059 3' -52 NC_004065.1 + 113915 0.67 0.990716
Target:  5'- aGGGCGGAGAucgcgCGUGucgacgacgcggcgcUcgGGGGCUGg -3'
miRNA:   3'- -CUCGCCUCUuua--GCAU---------------GuaCCCUGGC- -5'
16059 3' -52 NC_004065.1 + 226124 0.67 0.990224
Target:  5'- aGGCGGGGG--UCGccGCGUGGaGGCUGg -3'
miRNA:   3'- cUCGCCUCUuuAGCa-UGUACC-CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.