miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 3' -52 NC_004065.1 + 116743 0.67 0.990224
Target:  5'- uGAGgaUGGAGGAAUCGaggcgUACAUcGGGuCCGa -3'
miRNA:   3'- -CUC--GCCUCUUUAGC-----AUGUA-CCCuGGC- -5'
16059 3' -52 NC_004065.1 + 51026 0.68 0.985855
Target:  5'- -cGCGGcGAGAUCGaUGCAcgGGGugCu -3'
miRNA:   3'- cuCGCCuCUUUAGC-AUGUa-CCCugGc -5'
16059 3' -52 NC_004065.1 + 147793 0.68 0.9822
Target:  5'- gGAGgGGAGGAAggUGUACGaguUGGGAgUGg -3'
miRNA:   3'- -CUCgCCUCUUUa-GCAUGU---ACCCUgGC- -5'
16059 3' -52 NC_004065.1 + 174418 0.69 0.977406
Target:  5'- aGAGCgGGAGGGAcgcggucacggacUCGUACGugucuuuUGGGAUCa -3'
miRNA:   3'- -CUCG-CCUCUUU-------------AGCAUGU-------ACCCUGGc -5'
16059 3' -52 NC_004065.1 + 136288 0.7 0.956657
Target:  5'- gGGGUGcGAGGAAUCGaGCcgGGGAgCUGg -3'
miRNA:   3'- -CUCGC-CUCUUUAGCaUGuaCCCU-GGC- -5'
16059 3' -52 NC_004065.1 + 58347 0.7 0.956279
Target:  5'- -uGCGGAGA---CGUACuggaacuAUGGGGCCa -3'
miRNA:   3'- cuCGCCUCUuuaGCAUG-------UACCCUGGc -5'
16059 3' -52 NC_004065.1 + 59809 0.7 0.952771
Target:  5'- cGAGacaGGAGAGAuccuccUCGUGCAggcgaUGGGGCuCGa -3'
miRNA:   3'- -CUCg--CCUCUUU------AGCAUGU-----ACCCUG-GC- -5'
16059 3' -52 NC_004065.1 + 86223 0.7 0.946079
Target:  5'- aGGGCaGGGGguGUCuGUcgagauagugggugaACAUGGGACCGu -3'
miRNA:   3'- -CUCG-CCUCuuUAG-CA---------------UGUACCCUGGC- -5'
16059 3' -52 NC_004065.1 + 171979 0.71 0.924584
Target:  5'- cGGCGGAGggGUCGU-CGUGaacgacGACCa -3'
miRNA:   3'- cUCGCCUCuuUAGCAuGUACc-----CUGGc -5'
16059 3' -52 NC_004065.1 + 28503 0.71 0.924584
Target:  5'- -cGCGGAGcuc-CGUcGCAUGGGACUGc -3'
miRNA:   3'- cuCGCCUCuuuaGCA-UGUACCCUGGC- -5'
16059 3' -52 NC_004065.1 + 91778 0.71 0.919058
Target:  5'- aGGCuGGAGAGAUCGUcguccgcCAUGGcGACCu -3'
miRNA:   3'- cUCG-CCUCUUUAGCAu------GUACC-CUGGc -5'
16059 3' -52 NC_004065.1 + 66846 0.73 0.858951
Target:  5'- aGGCGGAGAGGUaCGUGCcgGGaaaucGCCGa -3'
miRNA:   3'- cUCGCCUCUUUA-GCAUGuaCCc----UGGC- -5'
16059 3' -52 NC_004065.1 + 33661 0.76 0.715401
Target:  5'- cGGCGGAGAuagCGggACAUGGaGGCCGa -3'
miRNA:   3'- cUCGCCUCUuuaGCa-UGUACC-CUGGC- -5'
16059 3' -52 NC_004065.1 + 88340 1.09 0.011828
Target:  5'- aGAGCGGAGAAAUCGUACAUGGGACCGc -3'
miRNA:   3'- -CUCGCCUCUUUAGCAUGUACCCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.