Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16059 | 3' | -52 | NC_004065.1 | + | 226124 | 0.67 | 0.990224 |
Target: 5'- aGGCGGGGG--UCGccGCGUGGaGGCUGg -3' miRNA: 3'- cUCGCCUCUuuAGCa-UGUACC-CUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 203002 | 0.67 | 0.991304 |
Target: 5'- cGGGUGGAGGgugguaaGAUUGgcgGCGUGGaGGCUGu -3' miRNA: 3'- -CUCGCCUCU-------UUAGCa--UGUACC-CUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 187022 | 0.66 | 0.995089 |
Target: 5'- cGAGUacgaGGAGAccUCGUu--UGGGACCa -3' miRNA: 3'- -CUCG----CCUCUuuAGCAuguACCCUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 185222 | 0.67 | 0.991417 |
Target: 5'- -cGCGGAGAAucCGUAUcgGaGGACaCGu -3' miRNA: 3'- cuCGCCUCUUuaGCAUGuaC-CCUG-GC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 174418 | 0.69 | 0.977406 |
Target: 5'- aGAGCgGGAGGGAcgcggucacggacUCGUACGugucuuuUGGGAUCa -3' miRNA: 3'- -CUCG-CCUCUUU-------------AGCAUGU-------ACCCUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 171979 | 0.71 | 0.924584 |
Target: 5'- cGGCGGAGggGUCGU-CGUGaacgacGACCa -3' miRNA: 3'- cUCGCCUCuuUAGCAuGUACc-----CUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 161024 | 0.67 | 0.992492 |
Target: 5'- aGGCGGcaucgaCGUGCA-GGGGCCGg -3' miRNA: 3'- cUCGCCucuuuaGCAUGUaCCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 147793 | 0.68 | 0.9822 |
Target: 5'- gGAGgGGAGGAAggUGUACGaguUGGGAgUGg -3' miRNA: 3'- -CUCgCCUCUUUa-GCAUGU---ACCCUgGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 144336 | 0.66 | 0.995089 |
Target: 5'- uAGCGGAuGAuGggGUACAUGGcGCCGc -3' miRNA: 3'- cUCGCCU-CUuUagCAUGUACCcUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 136768 | 0.67 | 0.99239 |
Target: 5'- -uGCGGGGGGAgagCGUgggggauGCGggGGGGCCa -3' miRNA: 3'- cuCGCCUCUUUa--GCA-------UGUa-CCCUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 136288 | 0.7 | 0.956657 |
Target: 5'- gGGGUGcGAGGAAUCGaGCcgGGGAgCUGg -3' miRNA: 3'- -CUCGC-CUCUUUAGCaUGuaCCCU-GGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 136194 | 0.66 | 0.99432 |
Target: 5'- gGAGCucGGGGAGGgaagcCGgACA-GGGACCGg -3' miRNA: 3'- -CUCG--CCUCUUUa----GCaUGUaCCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 136162 | 0.66 | 0.99432 |
Target: 5'- gGAGCucGGGGAGGgaagcCGgACA-GGGACCGg -3' miRNA: 3'- -CUCG--CCUCUUUa----GCaUGUaCCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 136130 | 0.66 | 0.99432 |
Target: 5'- gGAGCucGGGGAGGgaagcCGgACA-GGGACCGg -3' miRNA: 3'- -CUCG--CCUCUUUa----GCaUGUaCCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 123526 | 0.66 | 0.996904 |
Target: 5'- cGGGCuGGuGugGUCGUACAgGGuGGCCa -3' miRNA: 3'- -CUCG-CCuCuuUAGCAUGUaCC-CUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 116743 | 0.67 | 0.990224 |
Target: 5'- uGAGgaUGGAGGAAUCGaggcgUACAUcGGGuCCGa -3' miRNA: 3'- -CUC--GCCUCUUUAGC-----AUGUA-CCCuGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 113915 | 0.67 | 0.990716 |
Target: 5'- aGGGCGGAGAucgcgCGUGucgacgacgcggcgcUcgGGGGCUGg -3' miRNA: 3'- -CUCGCCUCUuua--GCAU---------------GuaCCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 105076 | 0.66 | 0.996374 |
Target: 5'- cAGCGGGGcAGGUCGUACA-GGauaGGCgCGg -3' miRNA: 3'- cUCGCCUC-UUUAGCAUGUaCC---CUG-GC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 95858 | 0.66 | 0.996374 |
Target: 5'- cAGaCGGAGccGUCcUGCGUGuGGACCa -3' miRNA: 3'- cUC-GCCUCuuUAGcAUGUAC-CCUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 91778 | 0.71 | 0.919058 |
Target: 5'- aGGCuGGAGAGAUCGUcguccgcCAUGGcGACCu -3' miRNA: 3'- cUCG-CCUCUUUAGCAu------GUACC-CUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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