Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16059 | 3' | -52 | NC_004065.1 | + | 123526 | 0.66 | 0.996904 |
Target: 5'- cGGGCuGGuGugGUCGUACAgGGuGGCCa -3' miRNA: 3'- -CUCG-CCuCuuUAGCAUGUaCC-CUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 144336 | 0.66 | 0.995089 |
Target: 5'- uAGCGGAuGAuGggGUACAUGGcGCCGc -3' miRNA: 3'- cUCGCCU-CUuUagCAUGUACCcUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 18585 | 0.66 | 0.995089 |
Target: 5'- gGAGCGGAGggGccUCGUugGUGuugucgucACCGc -3' miRNA: 3'- -CUCGCCUCuuU--AGCAugUACcc------UGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 187022 | 0.66 | 0.995089 |
Target: 5'- cGAGUacgaGGAGAccUCGUu--UGGGACCa -3' miRNA: 3'- -CUCG----CCUCUuuAGCAuguACCCUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 71850 | 0.66 | 0.995771 |
Target: 5'- aGAGCGGAGGGAUCcGgaaaGCGcGGccGACCa -3' miRNA: 3'- -CUCGCCUCUUUAG-Ca---UGUaCC--CUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 58800 | 0.66 | 0.996374 |
Target: 5'- aGGgGGAuGGAGUUGUugAUGGucuuGGCCGa -3' miRNA: 3'- cUCgCCU-CUUUAGCAugUACC----CUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 89833 | 0.66 | 0.996374 |
Target: 5'- cGGgGGAGAAGgcCGUgGCGUaGGGGCUGa -3' miRNA: 3'- cUCgCCUCUUUa-GCA-UGUA-CCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 105076 | 0.66 | 0.996374 |
Target: 5'- cAGCGGGGcAGGUCGUACA-GGauaGGCgCGg -3' miRNA: 3'- cUCGCCUC-UUUAGCAUGUaCC---CUG-GC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 33176 | 0.66 | 0.996594 |
Target: 5'- cGAGCGGAcuGGAggaaccgaagugcacGUCGUACAUGaGGuCgCGg -3' miRNA: 3'- -CUCGCCU--CUU---------------UAGCAUGUAC-CCuG-GC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 161024 | 0.67 | 0.992492 |
Target: 5'- aGGCGGcaucgaCGUGCA-GGGGCCGg -3' miRNA: 3'- cUCGCCucuuuaGCAUGUaCCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 113915 | 0.67 | 0.990716 |
Target: 5'- aGGGCGGAGAucgcgCGUGucgacgacgcggcgcUcgGGGGCUGg -3' miRNA: 3'- -CUCGCCUCUuua--GCAU---------------GuaCCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 116743 | 0.67 | 0.990224 |
Target: 5'- uGAGgaUGGAGGAAUCGaggcgUACAUcGGGuCCGa -3' miRNA: 3'- -CUC--GCCUCUUUAGC-----AUGUA-CCCuGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 33661 | 0.76 | 0.715401 |
Target: 5'- cGGCGGAGAuagCGggACAUGGaGGCCGa -3' miRNA: 3'- cUCGCCUCUuuaGCa-UGUACC-CUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 66846 | 0.73 | 0.858951 |
Target: 5'- aGGCGGAGAGGUaCGUGCcgGGaaaucGCCGa -3' miRNA: 3'- cUCGCCUCUUUA-GCAUGuaCCc----UGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 91778 | 0.71 | 0.919058 |
Target: 5'- aGGCuGGAGAGAUCGUcguccgcCAUGGcGACCu -3' miRNA: 3'- cUCG-CCUCUUUAGCAu------GUACC-CUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 86223 | 0.7 | 0.946079 |
Target: 5'- aGGGCaGGGGguGUCuGUcgagauagugggugaACAUGGGACCGu -3' miRNA: 3'- -CUCG-CCUCuuUAG-CA---------------UGUACCCUGGC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 59809 | 0.7 | 0.952771 |
Target: 5'- cGAGacaGGAGAGAuccuccUCGUGCAggcgaUGGGGCuCGa -3' miRNA: 3'- -CUCg--CCUCUUU------AGCAUGU-----ACCCUG-GC- -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 174418 | 0.69 | 0.977406 |
Target: 5'- aGAGCgGGAGGGAcgcggucacggacUCGUACGugucuuuUGGGAUCa -3' miRNA: 3'- -CUCG-CCUCUUU-------------AGCAUGU-------ACCCUGGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 51026 | 0.68 | 0.985855 |
Target: 5'- -cGCGGcGAGAUCGaUGCAcgGGGugCu -3' miRNA: 3'- cuCGCCuCUUUAGC-AUGUa-CCCugGc -5' |
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16059 | 3' | -52 | NC_004065.1 | + | 226124 | 0.67 | 0.990224 |
Target: 5'- aGGCGGGGG--UCGccGCGUGGaGGCUGg -3' miRNA: 3'- cUCGCCUCUuuAGCa-UGUACC-CUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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