miRNA display CGI


Results 1 - 20 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 68166 0.66 0.517841
Target:  5'- uCGCGGCgGCGcGCgcgacggagcugucgGCC-CCGCCGCUg- -3'
miRNA:   3'- -GCGCCGgCGC-CG---------------UGGcGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 175887 0.66 0.517841
Target:  5'- uGCGGuuGUGGCACCuguuccauugguccCCGCUGCUg- -3'
miRNA:   3'- gCGCCggCGCCGUGGc-------------GGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 221762 0.66 0.514325
Target:  5'- uGCGGuuGCGGCGaCGgUAUCGUCUg -3'
miRNA:   3'- gCGCCggCGCCGUgGCgGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 194094 0.66 0.514325
Target:  5'- uGCGGCCGCGacagaGCACCGaacggUCGCCa- -3'
miRNA:   3'- gCGCCGGCGC-----CGUGGCggu--GGCGGga -5'
16059 5' -67.9 NC_004065.1 + 96283 0.66 0.514325
Target:  5'- gGCGGCCaGgGGCGuCaCGgaCGCCGUCCa -3'
miRNA:   3'- gCGCCGG-CgCCGU-G-GCg-GUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 86745 0.66 0.514325
Target:  5'- aCGCcGCCuCGGCccuugaagcuGCCGCCcCCGCCg- -3'
miRNA:   3'- -GCGcCGGcGCCG----------UGGCGGuGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 487 0.66 0.514325
Target:  5'- cCG-GGCCGC-GCGCCGCguCCGCg-- -3'
miRNA:   3'- -GCgCCGGCGcCGUGGCGguGGCGgga -5'
16059 5' -67.9 NC_004065.1 + 113704 0.66 0.514325
Target:  5'- aCGCcGUCGC--CGCUGCCGCCGCCg- -3'
miRNA:   3'- -GCGcCGGCGccGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 145073 0.66 0.514325
Target:  5'- cCGauGCCGgGgaaguGCGCCGCCACCGagaacaCCa -3'
miRNA:   3'- -GCgcCGGCgC-----CGUGGCGGUGGCg-----GGa -5'
16059 5' -67.9 NC_004065.1 + 210870 0.66 0.514325
Target:  5'- aGCGGCaucgGCaGCAUCGUCGUCGUCCUc -3'
miRNA:   3'- gCGCCGg---CGcCGUGGCGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 140436 0.66 0.514325
Target:  5'- -cUGaGCCGCGGCugUuGCCGCgGCCg- -3'
miRNA:   3'- gcGC-CGGCGCCGugG-CGGUGgCGGga -5'
16059 5' -67.9 NC_004065.1 + 83953 0.66 0.514325
Target:  5'- uGCGuGuuGCGGUAgCGgCACuCGUCCUc -3'
miRNA:   3'- gCGC-CggCGCCGUgGCgGUG-GCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 31090 0.66 0.513447
Target:  5'- gGCGGCCuuggccgccaggGUGGagcgggcaggcacCACCGUCACCGUCUc -3'
miRNA:   3'- gCGCCGG------------CGCC-------------GUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 110744 0.66 0.511694
Target:  5'- gGCGGaCGUccccuucuGGCGCCGCCugacauauaggcgcGCgGCCCg -3'
miRNA:   3'- gCGCCgGCG--------CCGUGGCGG--------------UGgCGGGa -5'
16059 5' -67.9 NC_004065.1 + 165817 0.66 0.505577
Target:  5'- uCGCcGCCGa--CACUGCCuCCGCCCg -3'
miRNA:   3'- -GCGcCGGCgccGUGGCGGuGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 98977 0.66 0.505577
Target:  5'- cCGC-GCCGCucuuaguaucccGGCGCCGCCAgaGCaCCc -3'
miRNA:   3'- -GCGcCGGCG------------CCGUGGCGGUggCG-GGa -5'
16059 5' -67.9 NC_004065.1 + 133174 0.66 0.505577
Target:  5'- gGCGcCCGCGGCGacaGCgCGCCGUCUc -3'
miRNA:   3'- gCGCcGGCGCCGUgg-CG-GUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 213485 0.66 0.505577
Target:  5'- aGCGGUCGCcGCgACCGUCGaCGCCa- -3'
miRNA:   3'- gCGCCGGCGcCG-UGGCGGUgGCGGga -5'
16059 5' -67.9 NC_004065.1 + 36205 0.66 0.505577
Target:  5'- gGCGGUuacaGCcGCACCGUgGUCGCCCUu -3'
miRNA:   3'- gCGCCGg---CGcCGUGGCGgUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 198132 0.66 0.505577
Target:  5'- uGCGaGCUG-GuCAUCGCCGCCGCCa- -3'
miRNA:   3'- gCGC-CGGCgCcGUGGCGGUGGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.