miRNA display CGI


Results 1 - 20 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 107952 0.66 0.505577
Target:  5'- gCGgGGCaccugguagaCGCGGUAgCCGUCcCCGUCCUg -3'
miRNA:   3'- -GCgCCG----------GCGCCGU-GGCGGuGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 36205 0.66 0.505577
Target:  5'- gGCGGUuacaGCcGCACCGUgGUCGCCCUu -3'
miRNA:   3'- gCGCCGg---CGcCGUGGCGgUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 36110 0.66 0.479733
Target:  5'- gGCGGCaaCGGgGCCGCUGCCGgCg- -3'
miRNA:   3'- gCGCCGgcGCCgUGGCGGUGGCgGga -5'
16059 5' -67.9 NC_004065.1 + 207520 0.66 0.496894
Target:  5'- aGCGGUCGuCGGUccuccUCGCCGCgCGCuCCg -3'
miRNA:   3'- gCGCCGGC-GCCGu----GGCGGUG-GCG-GGa -5'
16059 5' -67.9 NC_004065.1 + 191849 0.66 0.488278
Target:  5'- uGaCGGCCGCGaCuAUCGCCGCgauggCGCCCc -3'
miRNA:   3'- gC-GCCGGCGCcG-UGGCGGUG-----GCGGGa -5'
16059 5' -67.9 NC_004065.1 + 213485 0.66 0.505577
Target:  5'- aGCGGUCGCcGCgACCGUCGaCGCCa- -3'
miRNA:   3'- gCGCCGGCGcCG-UGGCGGUgGCGGga -5'
16059 5' -67.9 NC_004065.1 + 62667 0.66 0.504706
Target:  5'- aGaCGGCaGCGGCGacccuguCUGCCGCCGCgUUg -3'
miRNA:   3'- gC-GCCGgCGCCGU-------GGCGGUGGCGgGA- -5'
16059 5' -67.9 NC_004065.1 + 138231 0.66 0.488278
Target:  5'- uGCGauGUCGaGGCGCuCGCCGCCGUCg- -3'
miRNA:   3'- gCGC--CGGCgCCGUG-GCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 168564 0.66 0.479733
Target:  5'- gGCGGCgGCGGCGacagcgggCGUCuCgGCCCg -3'
miRNA:   3'- gCGCCGgCGCCGUg-------GCGGuGgCGGGa -5'
16059 5' -67.9 NC_004065.1 + 25013 0.66 0.505577
Target:  5'- cCGUGGgCGCGGCAagggGCCGugucCCGaCCCUc -3'
miRNA:   3'- -GCGCCgGCGCCGUgg--CGGU----GGC-GGGA- -5'
16059 5' -67.9 NC_004065.1 + 103303 0.66 0.479733
Target:  5'- cCGCGGCgGCaGGCucaGCgGUCGCCGCa-- -3'
miRNA:   3'- -GCGCCGgCG-CCG---UGgCGGUGGCGgga -5'
16059 5' -67.9 NC_004065.1 + 64377 0.66 0.479733
Target:  5'- --gGGCCGCGGCcggagggaauucACCGaCGCCGaCCUa -3'
miRNA:   3'- gcgCCGGCGCCG------------UGGCgGUGGCgGGA- -5'
16059 5' -67.9 NC_004065.1 + 88977 0.66 0.479733
Target:  5'- gGUGGCCaccuGgGGCGCCuugaCGCCGUCCa -3'
miRNA:   3'- gCGCCGG----CgCCGUGGcg--GUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 109196 0.66 0.488278
Target:  5'- gGcCGGCgGCGGCGCCucgGCCucuucCUGCUCg -3'
miRNA:   3'- gC-GCCGgCGCCGUGG---CGGu----GGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 66625 0.66 0.488278
Target:  5'- cCGCgGGCUGCGGCGCUGCguggcggaCGCgCUg -3'
miRNA:   3'- -GCG-CCGGCGCCGUGGCGgug-----GCGgGA- -5'
16059 5' -67.9 NC_004065.1 + 56720 0.66 0.496894
Target:  5'- aGCGGCgGCGGCgGCgGCagcaGCUGUCUc -3'
miRNA:   3'- gCGCCGgCGCCG-UGgCGg---UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 111712 0.66 0.479733
Target:  5'- gGCuGGCagggaaGgGGCAUCGCCGUCGCCUUc -3'
miRNA:   3'- gCG-CCGg-----CgCCGUGGCGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 66139 0.66 0.479733
Target:  5'- gCGCugGGCCGCGG-ACCGgCGCCaGCUg- -3'
miRNA:   3'- -GCG--CCGGCGCCgUGGCgGUGG-CGGga -5'
16059 5' -67.9 NC_004065.1 + 147477 0.66 0.479733
Target:  5'- uGCGGCCGCauGGUgGCCGUCcaGCCccuggacgggGCCCUg -3'
miRNA:   3'- gCGCCGGCG--CCG-UGGCGG--UGG----------CGGGA- -5'
16059 5' -67.9 NC_004065.1 + 221762 0.66 0.514325
Target:  5'- uGCGGuuGCGGCGaCGgUAUCGUCUg -3'
miRNA:   3'- gCGCCggCGCCGUgGCgGUGGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.