miRNA display CGI


Results 21 - 40 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 26018 0.66 0.496894
Target:  5'- cCGUGGCCuCGGCGUCGuCCACCagcgGCUCg -3'
miRNA:   3'- -GCGCCGGcGCCGUGGC-GGUGG----CGGGa -5'
16059 5' -67.9 NC_004065.1 + 168564 0.66 0.479733
Target:  5'- gGCGGCgGCGGCGacagcgggCGUCuCgGCCCg -3'
miRNA:   3'- gCGCCGgCGCCGUg-------GCGGuGgCGGGa -5'
16059 5' -67.9 NC_004065.1 + 109196 0.66 0.488278
Target:  5'- gGcCGGCgGCGGCGCCucgGCCucuucCUGCUCg -3'
miRNA:   3'- gC-GCCGgCGCCGUGG---CGGu----GGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 113704 0.66 0.514325
Target:  5'- aCGCcGUCGC--CGCUGCCGCCGCCg- -3'
miRNA:   3'- -GCGcCGGCGccGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 110744 0.66 0.511694
Target:  5'- gGCGGaCGUccccuucuGGCGCCGCCugacauauaggcgcGCgGCCCg -3'
miRNA:   3'- gCGCCgGCG--------CCGUGGCGG--------------UGgCGGGa -5'
16059 5' -67.9 NC_004065.1 + 36205 0.66 0.505577
Target:  5'- gGCGGUuacaGCcGCACCGUgGUCGCCCUu -3'
miRNA:   3'- gCGCCGg---CGcCGUGGCGgUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 147477 0.66 0.479733
Target:  5'- uGCGGCCGCauGGUgGCCGUCcaGCCccuggacgggGCCCUg -3'
miRNA:   3'- gCGCCGGCG--CCG-UGGCGG--UGG----------CGGGA- -5'
16059 5' -67.9 NC_004065.1 + 62667 0.66 0.504706
Target:  5'- aGaCGGCaGCGGCGacccuguCUGCCGCCGCgUUg -3'
miRNA:   3'- gC-GCCGgCGCCGU-------GGCGGUGGCGgGA- -5'
16059 5' -67.9 NC_004065.1 + 213485 0.66 0.505577
Target:  5'- aGCGGUCGCcGCgACCGUCGaCGCCa- -3'
miRNA:   3'- gCGCCGGCGcCG-UGGCGGUgGCGGga -5'
16059 5' -67.9 NC_004065.1 + 487 0.66 0.514325
Target:  5'- cCG-GGCCGC-GCGCCGCguCCGCg-- -3'
miRNA:   3'- -GCgCCGGCGcCGUGGCGguGGCGgga -5'
16059 5' -67.9 NC_004065.1 + 66139 0.66 0.479733
Target:  5'- gCGCugGGCCGCGG-ACCGgCGCCaGCUg- -3'
miRNA:   3'- -GCG--CCGGCGCCgUGGCgGUGG-CGGga -5'
16059 5' -67.9 NC_004065.1 + 96283 0.66 0.514325
Target:  5'- gGCGGCCaGgGGCGuCaCGgaCGCCGUCCa -3'
miRNA:   3'- gCGCCGG-CgCCGU-G-GCg-GUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 130027 0.66 0.479733
Target:  5'- gGCGGCgGCGGCuacgaCGaagacgacgacCCGCgGCCCg -3'
miRNA:   3'- gCGCCGgCGCCGug---GC-----------GGUGgCGGGa -5'
16059 5' -67.9 NC_004065.1 + 25013 0.66 0.505577
Target:  5'- cCGUGGgCGCGGCAagggGCCGugucCCGaCCCUc -3'
miRNA:   3'- -GCGCCgGCGCCGUgg--CGGU----GGC-GGGA- -5'
16059 5' -67.9 NC_004065.1 + 103303 0.66 0.479733
Target:  5'- cCGCGGCgGCaGGCucaGCgGUCGCCGCa-- -3'
miRNA:   3'- -GCGCCGgCG-CCG---UGgCGGUGGCGgga -5'
16059 5' -67.9 NC_004065.1 + 207520 0.66 0.496894
Target:  5'- aGCGGUCGuCGGUccuccUCGCCGCgCGCuCCg -3'
miRNA:   3'- gCGCCGGC-GCCGu----GGCGGUG-GCG-GGa -5'
16059 5' -67.9 NC_004065.1 + 31090 0.66 0.513447
Target:  5'- gGCGGCCuuggccgccaggGUGGagcgggcaggcacCACCGUCACCGUCUc -3'
miRNA:   3'- gCGCCGG------------CGCC-------------GUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 140436 0.66 0.514325
Target:  5'- -cUGaGCCGCGGCugUuGCCGCgGCCg- -3'
miRNA:   3'- gcGC-CGGCGCCGugG-CGGUGgCGGga -5'
16059 5' -67.9 NC_004065.1 + 107952 0.66 0.505577
Target:  5'- gCGgGGCaccugguagaCGCGGUAgCCGUCcCCGUCCUg -3'
miRNA:   3'- -GCgCCG----------GCGCCGU-GGCGGuGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 166514 0.66 0.471262
Target:  5'- -aCGGCCGCgagGGCGagGCCAuCCGCaCCUg -3'
miRNA:   3'- gcGCCGGCG---CCGUggCGGU-GGCG-GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.