miRNA display CGI


Results 1 - 20 of 324 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 88374 1.06 0.000759
Target:  5'- cCGCGGCCGCGGCACCGCCACCGCCCUc -3'
miRNA:   3'- -GCGCCGGCGCCGUGGCGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 120148 0.86 0.024318
Target:  5'- aCGCGGCCGCGGCGaCGCCgguggcACCGCCCg -3'
miRNA:   3'- -GCGCCGGCGCCGUgGCGG------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 128419 0.84 0.029628
Target:  5'- aGCGGCgGCGGCGCCGCCACCGagUCUg -3'
miRNA:   3'- gCGCCGgCGCCGUGGCGGUGGCg-GGA- -5'
16059 5' -67.9 NC_004065.1 + 110189 0.82 0.042834
Target:  5'- gGCGGCCGCGaCGC-GCCGCCGCCCg -3'
miRNA:   3'- gCGCCGGCGCcGUGgCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 75871 0.81 0.050824
Target:  5'- cCGCcGCCGCcGcCGCCGCCACCGCCCg -3'
miRNA:   3'- -GCGcCGGCGcC-GUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 201022 0.81 0.052078
Target:  5'- cCGCGuGCgCGCGGCGCCucGCCACCGCCg- -3'
miRNA:   3'- -GCGC-CG-GCGCCGUGG--CGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 155405 0.81 0.056571
Target:  5'- aGCGGUgGCGGCgguuccgggaacucgGCCGCCACCGCCa- -3'
miRNA:   3'- gCGCCGgCGCCG---------------UGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 97693 0.8 0.058813
Target:  5'- uCGCGGUCGCu--GCCGCCGCCGCCCg -3'
miRNA:   3'- -GCGCCGGCGccgUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 56645 0.8 0.060258
Target:  5'- aGCGGCCGCGGCACCcuUCACCGUCg- -3'
miRNA:   3'- gCGCCGGCGCCGUGGc-GGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 101609 0.8 0.060258
Target:  5'- -uCGGUgGCGGCGCCGCCGCCGCUg- -3'
miRNA:   3'- gcGCCGgCGCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 78877 0.79 0.069506
Target:  5'- uCGCGGUcgccgacgaucauCGCGGCGuuGCCGCCGCCUUc -3'
miRNA:   3'- -GCGCCG-------------GCGCCGUggCGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 170254 0.79 0.076721
Target:  5'- uCGUGGCCGUGGC--CGCCGCCGCCa- -3'
miRNA:   3'- -GCGCCGGCGCCGugGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 24579 0.79 0.076721
Target:  5'- gCGCGGuCCGCGcGUgucgucGCCGCCACCGCCg- -3'
miRNA:   3'- -GCGCC-GGCGC-CG------UGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 120831 0.79 0.076721
Target:  5'- --aGGCCGaGGCGCCGCCGCCGgCCUu -3'
miRNA:   3'- gcgCCGGCgCCGUGGCGGUGGCgGGA- -5'
16059 5' -67.9 NC_004065.1 + 118169 0.78 0.080304
Target:  5'- cCGCGGCgGCGGCcgucacgGCUGCCGCCGUUCg -3'
miRNA:   3'- -GCGCCGgCGCCG-------UGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 58065 0.78 0.080497
Target:  5'- cCGCcGCCGC--CGCCGCCACCGCCCg -3'
miRNA:   3'- -GCGcCGGCGccGUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 208044 0.78 0.08245
Target:  5'- gCGUGGCCGUGGCgGCCcUCACCGUCCUg -3'
miRNA:   3'- -GCGCCGGCGCCG-UGGcGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 59716 0.78 0.084449
Target:  5'- aGCGGCCGCGGCGCacgGCgACCGUCg- -3'
miRNA:   3'- gCGCCGGCGCCGUGg--CGgUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 151357 0.78 0.086494
Target:  5'- uCGgGcGCCGCGGCGCCgGCCGCUGCgCUg -3'
miRNA:   3'- -GCgC-CGGCGCCGUGG-CGGUGGCGgGA- -5'
16059 5' -67.9 NC_004065.1 + 74607 0.78 0.091596
Target:  5'- gGCGGUgGCGGCcgaguucccggaaccGCCGCCACCGCUa- -3'
miRNA:   3'- gCGCCGgCGCCG---------------UGGCGGUGGCGGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.