miRNA display CGI


Results 21 - 40 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 63863 0.77 0.099787
Target:  5'- uCGCGGUgcagaCGuCGGCGCCGCUGCCGCCg- -3'
miRNA:   3'- -GCGCCG-----GC-GCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 66383 0.77 0.102182
Target:  5'- cCGCuGCCGCuGcCGCCGCCGCCGCCgCUc -3'
miRNA:   3'- -GCGcCGGCGcC-GUGGCGGUGGCGG-GA- -5'
16059 5' -67.9 NC_004065.1 + 76383 0.77 0.104631
Target:  5'- gCGCcGCCGCGGaugaGCuCGCCGCCGUCCg -3'
miRNA:   3'- -GCGcCGGCGCCg---UG-GCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 99141 0.76 0.109438
Target:  5'- uGCGGCCGaCGGCgguaaacACCGUgGCCGCCUc -3'
miRNA:   3'- gCGCCGGC-GCCG-------UGGCGgUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 115156 0.76 0.109697
Target:  5'- cCGcCGGCCgGCGGCACCGUCGUCGCCa- -3'
miRNA:   3'- -GC-GCCGG-CGCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 127133 0.76 0.109697
Target:  5'- uCGCGGCgGCGGCGCUaccggcggcgGCgAUCGCCCUc -3'
miRNA:   3'- -GCGCCGgCGCCGUGG----------CGgUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 186153 0.76 0.112314
Target:  5'- gGUGGCCGUGGagGCCGCCACCGaacuCCa -3'
miRNA:   3'- gCGCCGGCGCCg-UGGCGGUGGCg---GGa -5'
16059 5' -67.9 NC_004065.1 + 86893 0.76 0.112314
Target:  5'- aCGCaGGUCGCGGCGCCGgUcUCGCCCUc -3'
miRNA:   3'- -GCG-CCGGCGCCGUGGCgGuGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 200436 0.76 0.114991
Target:  5'- uGCaGGaCCGCGGuCACCGCgGCCGCCg- -3'
miRNA:   3'- gCG-CC-GGCGCC-GUGGCGgUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 167636 0.76 0.117726
Target:  5'- cCGCGGCCGCcaccccCGCCGCCACCaCCCc -3'
miRNA:   3'- -GCGCCGGCGcc----GUGGCGGUGGcGGGa -5'
16059 5' -67.9 NC_004065.1 + 77718 0.76 0.117726
Target:  5'- uCGUccCCGcCGGCACCGCCGCCGCCg- -3'
miRNA:   3'- -GCGccGGC-GCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 87407 0.76 0.120523
Target:  5'- aGCGGCCuugguuCGGCACCGCCAUCaGCuCCUc -3'
miRNA:   3'- gCGCCGGc-----GCCGUGGCGGUGG-CG-GGA- -5'
16059 5' -67.9 NC_004065.1 + 141652 0.75 0.129286
Target:  5'- gGCGGUgGCGGUGCCGCgGCCGCg-- -3'
miRNA:   3'- gCGCCGgCGCCGUGGCGgUGGCGgga -5'
16059 5' -67.9 NC_004065.1 + 199879 0.75 0.132336
Target:  5'- cCGCGGCUGggucCGGUcgcuCCGCCAcCCGCCCUc -3'
miRNA:   3'- -GCGCCGGC----GCCGu---GGCGGU-GGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 102887 0.75 0.132336
Target:  5'- uCGCcGCCGcCGGUAgCGCCGCCGCCg- -3'
miRNA:   3'- -GCGcCGGC-GCCGUgGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 99949 0.75 0.135137
Target:  5'- cCGCGGCgGCGGCuGCUGCUgcgaaacGCCGUCCg -3'
miRNA:   3'- -GCGCCGgCGCCG-UGGCGG-------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 77980 0.75 0.135137
Target:  5'- aCGCuGGCCGCGGCgaGCCGCCccgggacggaggaGCCGUUCg -3'
miRNA:   3'- -GCG-CCGGCGCCG--UGGCGG-------------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 159887 0.75 0.136717
Target:  5'- aGCGuGCuCGUguguuucugucgaucGGCGCCGCCGCCGCCgCUg -3'
miRNA:   3'- gCGC-CG-GCG---------------CCGUGGCGGUGGCGG-GA- -5'
16059 5' -67.9 NC_004065.1 + 173389 0.75 0.138635
Target:  5'- aGgGuGCCGCGGcCGCUGCCACCGCauCCa -3'
miRNA:   3'- gCgC-CGGCGCC-GUGGCGGUGGCG--GGa -5'
16059 5' -67.9 NC_004065.1 + 24483 0.75 0.138635
Target:  5'- --gGGCgCGUagauGGCACCGCCGCCGgCCCUg -3'
miRNA:   3'- gcgCCG-GCG----CCGUGGCGGUGGC-GGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.