miRNA display CGI


Results 21 - 40 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 36205 0.66 0.505577
Target:  5'- gGCGGUuacaGCcGCACCGUgGUCGCCCUu -3'
miRNA:   3'- gCGCCGg---CGcCGUGGCGgUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 213485 0.66 0.505577
Target:  5'- aGCGGUCGCcGCgACCGUCGaCGCCa- -3'
miRNA:   3'- gCGCCGGCGcCG-UGGCGGUgGCGGga -5'
16059 5' -67.9 NC_004065.1 + 133174 0.66 0.505577
Target:  5'- gGCGcCCGCGGCGacaGCgCGCCGUCUc -3'
miRNA:   3'- gCGCcGGCGCCGUgg-CG-GUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 62667 0.66 0.504706
Target:  5'- aGaCGGCaGCGGCGacccuguCUGCCGCCGCgUUg -3'
miRNA:   3'- gC-GCCGgCGCCGU-------GGCGGUGGCGgGA- -5'
16059 5' -67.9 NC_004065.1 + 209310 0.66 0.502965
Target:  5'- uCGUcGCCGuCGGUGCCGUCgugugcuacuggggACUGCCCg -3'
miRNA:   3'- -GCGcCGGC-GCCGUGGCGG--------------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 30503 0.66 0.496894
Target:  5'- gCGCccGGCUGCGcGCACgugGCgGCCGCCg- -3'
miRNA:   3'- -GCG--CCGGCGC-CGUGg--CGgUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 120238 0.66 0.496894
Target:  5'- aCGUGcCCGCGGCGuaGCgC-CUGCCCUg -3'
miRNA:   3'- -GCGCcGGCGCCGUggCG-GuGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 52511 0.66 0.496894
Target:  5'- gCGCGGUgGCGGUGgUGCagagaguGCCGCUCa -3'
miRNA:   3'- -GCGCCGgCGCCGUgGCGg------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 66641 0.66 0.496894
Target:  5'- uCGuCGGCUuCGGCGCgGUgGgCGCCCg -3'
miRNA:   3'- -GC-GCCGGcGCCGUGgCGgUgGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 223906 0.66 0.496894
Target:  5'- gGCGGCgGCGGCGugaugguuCCuCCAucuCCGUCCg -3'
miRNA:   3'- gCGCCGgCGCCGU--------GGcGGU---GGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 207520 0.66 0.496894
Target:  5'- aGCGGUCGuCGGUccuccUCGCCGCgCGCuCCg -3'
miRNA:   3'- gCGCCGGC-GCCGu----GGCGGUG-GCG-GGa -5'
16059 5' -67.9 NC_004065.1 + 26018 0.66 0.496894
Target:  5'- cCGUGGCCuCGGCGUCGuCCACCagcgGCUCg -3'
miRNA:   3'- -GCGCCGGcGCCGUGGC-GGUGG----CGGGa -5'
16059 5' -67.9 NC_004065.1 + 56720 0.66 0.496894
Target:  5'- aGCGGCgGCGGCgGCgGCagcaGCUGUCUc -3'
miRNA:   3'- gCGCCGgCGCCG-UGgCGg---UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 173891 0.66 0.496029
Target:  5'- uCGCcgaGGCUgcagaagGCGaGCGCCGCCGUCGUCCg -3'
miRNA:   3'- -GCG---CCGG-------CGC-CGUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 107111 0.66 0.493439
Target:  5'- uCGCGGCugaucggCGCGGUgauccccauccccuACCGCCACCaucugcugggcaGCUCg -3'
miRNA:   3'- -GCGCCG-------GCGCCG--------------UGGCGGUGG------------CGGGa -5'
16059 5' -67.9 NC_004065.1 + 210354 0.66 0.488278
Target:  5'- -cCGGCC-CGGCAUaCGCCACCuUCCa -3'
miRNA:   3'- gcGCCGGcGCCGUG-GCGGUGGcGGGa -5'
16059 5' -67.9 NC_004065.1 + 191849 0.66 0.488278
Target:  5'- uGaCGGCCGCGaCuAUCGCCGCgauggCGCCCc -3'
miRNA:   3'- gC-GCCGGCGCcG-UGGCGGUG-----GCGGGa -5'
16059 5' -67.9 NC_004065.1 + 162204 0.66 0.488278
Target:  5'- uGCuGCgGCGGCA-CGuCCGgCGCCCg -3'
miRNA:   3'- gCGcCGgCGCCGUgGC-GGUgGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 109196 0.66 0.488278
Target:  5'- gGcCGGCgGCGGCGCCucgGCCucuucCUGCUCg -3'
miRNA:   3'- gC-GCCGgCGCCGUGG---CGGu----GGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 138231 0.66 0.488278
Target:  5'- uGCGauGUCGaGGCGCuCGCCGCCGUCg- -3'
miRNA:   3'- gCGC--CGGCgCCGUG-GCGGUGGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.