miRNA display CGI


Results 1 - 20 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 487 0.66 0.514325
Target:  5'- cCG-GGCCGC-GCGCCGCguCCGCg-- -3'
miRNA:   3'- -GCgCCGGCGcCGUGGCGguGGCGgga -5'
16059 5' -67.9 NC_004065.1 + 574 0.7 0.271089
Target:  5'- aCGgGGCUgGCGGCAgCGCCACC-CCg- -3'
miRNA:   3'- -GCgCCGG-CGCCGUgGCGGUGGcGGga -5'
16059 5' -67.9 NC_004065.1 + 658 0.68 0.381387
Target:  5'- -cCGGCCGCGcguagcgaGCACCcgcucgcuggucgaGCgACCGCCCg -3'
miRNA:   3'- gcGCCGGCGC--------CGUGG--------------CGgUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 4625 0.67 0.462868
Target:  5'- uCGagaGGgaGCGGCACCaucagcGCCAgCGCCCc -3'
miRNA:   3'- -GCg--CCggCGCCGUGG------CGGUgGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 5225 0.69 0.313913
Target:  5'- gGCGGUCGUGaccGUGCUGCCGcCCGCUCa -3'
miRNA:   3'- gCGCCGGCGC---CGUGGCGGU-GGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 5978 0.67 0.422128
Target:  5'- uCGCGGCCac--CGCCGUCAUgGCCCUc -3'
miRNA:   3'- -GCGCCGGcgccGUGGCGGUGgCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 6801 0.67 0.446318
Target:  5'- aGaaGaCCGCGuCGCCGCUACCGCCg- -3'
miRNA:   3'- gCgcC-GGCGCcGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 6910 0.68 0.391136
Target:  5'- aCGCGGCgGCuucagcugcgGGCACgGCCucggcguCCGCCg- -3'
miRNA:   3'- -GCGCCGgCG----------CCGUGgCGGu------GGCGGga -5'
16059 5' -67.9 NC_004065.1 + 16545 0.7 0.288842
Target:  5'- uCGaCGGUCGCGGCgACCGCuccgacuaCACCucaGCCCg -3'
miRNA:   3'- -GC-GCCGGCGCCG-UGGCG--------GUGG---CGGGa -5'
16059 5' -67.9 NC_004065.1 + 16690 0.68 0.383623
Target:  5'- aGCGGCgGUGGUAUCGaaGCCuCCCa -3'
miRNA:   3'- gCGCCGgCGCCGUGGCggUGGcGGGa -5'
16059 5' -67.9 NC_004065.1 + 20887 0.7 0.307494
Target:  5'- -aCGGCCGCGGCGCUGgggaauCCGCUCg -3'
miRNA:   3'- gcGCCGGCGCCGUGGCggu---GGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 21956 0.67 0.454552
Target:  5'- gGCGGCCagggccgucGuCGGCaggacggugaggGCCGCCACgGCCa- -3'
miRNA:   3'- gCGCCGG---------C-GCCG------------UGGCGGUGgCGGga -5'
16059 5' -67.9 NC_004065.1 + 22047 0.7 0.288235
Target:  5'- gGCaGGCCGCGGUAucccuccggucggUCGCgGCgGCCCa -3'
miRNA:   3'- gCG-CCGGCGCCGU-------------GGCGgUGgCGGGa -5'
16059 5' -67.9 NC_004065.1 + 22495 0.7 0.293113
Target:  5'- aCGCGGagcgCGCGGCgaggaggaccgacgACCGCUAUCGCgCCg -3'
miRNA:   3'- -GCGCCg---GCGCCG--------------UGGCGGUGGCG-GGa -5'
16059 5' -67.9 NC_004065.1 + 22669 0.67 0.4455
Target:  5'- uGcCGGUCGCGGUAUCGuuauauuCCACCuCCCa -3'
miRNA:   3'- gC-GCCGGCGCCGUGGC-------GGUGGcGGGa -5'
16059 5' -67.9 NC_004065.1 + 23270 0.67 0.462868
Target:  5'- aCGCGGUaCGacuGGCGCCcguaGCCGCgGCCUUc -3'
miRNA:   3'- -GCGCCG-GCg--CCGUGG----CGGUGgCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 24483 0.75 0.138635
Target:  5'- --gGGCgCGUagauGGCACCGCCGCCGgCCCUg -3'
miRNA:   3'- gcgCCG-GCG----CCGUGGCGGUGGC-GGGA- -5'
16059 5' -67.9 NC_004065.1 + 24579 0.79 0.076721
Target:  5'- gCGCGGuCCGCGcGUgucgucGCCGCCACCGCCg- -3'
miRNA:   3'- -GCGCC-GGCGC-CG------UGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 25013 0.66 0.505577
Target:  5'- cCGUGGgCGCGGCAagggGCCGugucCCGaCCCUc -3'
miRNA:   3'- -GCGCCgGCGCCGUgg--CGGU----GGC-GGGA- -5'
16059 5' -67.9 NC_004065.1 + 26018 0.66 0.496894
Target:  5'- cCGUGGCCuCGGCGUCGuCCACCagcgGCUCg -3'
miRNA:   3'- -GCGCCGGcGCCGUGGC-GGUGG----CGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.