miRNA display CGI


Results 21 - 40 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 26470 0.7 0.301176
Target:  5'- gGUGGUCGaCGGCACCGCaaaUACgCGCCg- -3'
miRNA:   3'- gCGCCGGC-GCCGUGGCG---GUG-GCGGga -5'
16059 5' -67.9 NC_004065.1 + 26956 0.73 0.195256
Target:  5'- gGCGGCCGCGGCGggcuccggagcUCGCCAaaaacaaCGCCa- -3'
miRNA:   3'- gCGCCGGCGCCGU-----------GGCGGUg------GCGGga -5'
16059 5' -67.9 NC_004065.1 + 28742 0.71 0.243467
Target:  5'- cCGCGGUgGCGGaCGCCuuCCugCGCCUg -3'
miRNA:   3'- -GCGCCGgCGCC-GUGGc-GGugGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 28999 0.67 0.422128
Target:  5'- gGCGGUgGCgaGGCGCCGCgCGCaCGCggCCUc -3'
miRNA:   3'- gCGCCGgCG--CCGUGGCG-GUG-GCG--GGA- -5'
16059 5' -67.9 NC_004065.1 + 29133 0.66 0.479733
Target:  5'- aGCGGCaguacCGCuaCACgaccgacgauuCGCCACCGCCCg -3'
miRNA:   3'- gCGCCG-----GCGccGUG-----------GCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 29229 0.7 0.276321
Target:  5'- cCGCGccgagacGCCGUcGC-CCGCCACCGCCg- -3'
miRNA:   3'- -GCGC-------CGGCGcCGuGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 29588 0.71 0.26537
Target:  5'- gGCGGCCGCGGUGa--CCGCgGUCCUg -3'
miRNA:   3'- gCGCCGGCGCCGUggcGGUGgCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 29983 0.7 0.282824
Target:  5'- gGCGGCgGCGGCAgUGgUAUCGCCa- -3'
miRNA:   3'- gCGCCGgCGCCGUgGCgGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 30503 0.66 0.496894
Target:  5'- gCGCccGGCUGCGcGCACgugGCgGCCGCCg- -3'
miRNA:   3'- -GCG--CCGGCGC-CGUGg--CGgUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 31031 0.7 0.271089
Target:  5'- -uCGGCCGCGGCcCUGCCGagCGCCa- -3'
miRNA:   3'- gcGCCGGCGCCGuGGCGGUg-GCGGga -5'
16059 5' -67.9 NC_004065.1 + 31090 0.66 0.513447
Target:  5'- gGCGGCCuuggccgccaggGUGGagcgggcaggcacCACCGUCACCGUCUc -3'
miRNA:   3'- gCGCCGG------------CGCC-------------GUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 32672 0.68 0.398744
Target:  5'- uCGCGGgCGCGGUucUCGCgCAgCGCCUUc -3'
miRNA:   3'- -GCGCCgGCGCCGu-GGCG-GUgGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 33475 0.69 0.340598
Target:  5'- uCGCGGCCGUgGGCGCCuaCG-CGCCg- -3'
miRNA:   3'- -GCGCCGGCG-CCGUGGcgGUgGCGGga -5'
16059 5' -67.9 NC_004065.1 + 34782 0.69 0.326387
Target:  5'- uCGCGGCCGCGGUGgUGCacUACCucggcaaGCCCc -3'
miRNA:   3'- -GCGCCGGCGCCGUgGCG--GUGG-------CGGGa -5'
16059 5' -67.9 NC_004065.1 + 35183 0.69 0.331749
Target:  5'- cCGCcGCCGUGGUcgGCCuggagaacguggcgGCCACCGCCa- -3'
miRNA:   3'- -GCGcCGGCGCCG--UGG--------------CGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 35561 0.73 0.195256
Target:  5'- gCGUGaGCgGCGGCGCCGCCgu-GCCCa -3'
miRNA:   3'- -GCGC-CGgCGCCGUGGCGGuggCGGGa -5'
16059 5' -67.9 NC_004065.1 + 35945 0.71 0.248798
Target:  5'- uCGCGGCCGCaGGUcgucggacuCgCGCCGCUGCuCCUg -3'
miRNA:   3'- -GCGCCGGCG-CCGu--------G-GCGGUGGCG-GGA- -5'
16059 5' -67.9 NC_004065.1 + 36110 0.66 0.479733
Target:  5'- gGCGGCaaCGGgGCCGCUGCCGgCg- -3'
miRNA:   3'- gCGCCGgcGCCgUGGCGGUGGCgGga -5'
16059 5' -67.9 NC_004065.1 + 36205 0.66 0.505577
Target:  5'- gGCGGUuacaGCcGCACCGUgGUCGCCCUu -3'
miRNA:   3'- gCGCCGg---CGcCGUGGCGgUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 37201 0.67 0.446318
Target:  5'- aGCGGCUGCcucaaGCGCagcgcccagaCGCCGCCGUCUc -3'
miRNA:   3'- gCGCCGGCGc----CGUG----------GCGGUGGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.