miRNA display CGI


Results 1 - 20 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 229429 0.69 0.347521
Target:  5'- gCGCGuaacuggucuGCCaccacgggGUGGCGCUGCCGCCaGCCCc -3'
miRNA:   3'- -GCGC----------CGG--------CGCCGUGGCGGUGG-CGGGa -5'
16059 5' -67.9 NC_004065.1 + 229383 0.67 0.454552
Target:  5'- gCGCGGCCGgacGCACUcacccacauCCGCCGCCUg -3'
miRNA:   3'- -GCGCCGGCgc-CGUGGc--------GGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 225624 0.69 0.329731
Target:  5'- cCGUGGCCaccGCuccgaacagcacuccGGCucCCGCCGCCGCCg- -3'
miRNA:   3'- -GCGCCGG---CG---------------CCGu-GGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 225383 0.68 0.406446
Target:  5'- cCGCGGCgGgGGCGCUGgCgcugaugguGCCGCUCc -3'
miRNA:   3'- -GCGCCGgCgCCGUGGCgG---------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 223906 0.66 0.496894
Target:  5'- gGCGGCgGCGGCGugaugguuCCuCCAucuCCGUCCg -3'
miRNA:   3'- gCGCCGgCGCCGU--------GGcGGU---GGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 221762 0.66 0.514325
Target:  5'- uGCGGuuGCGGCGaCGgUAUCGUCUg -3'
miRNA:   3'- gCGCCggCGCCGUgGCgGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 213485 0.66 0.505577
Target:  5'- aGCGGUCGCcGCgACCGUCGaCGCCa- -3'
miRNA:   3'- gCGCCGGCGcCG-UGGCGGUgGCGGga -5'
16059 5' -67.9 NC_004065.1 + 211947 0.71 0.248261
Target:  5'- aCGaGGCUGCGGCggucgcuGCCGCCAUCGUCg- -3'
miRNA:   3'- -GCgCCGGCGCCG-------UGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 210870 0.66 0.514325
Target:  5'- aGCGGCaucgGCaGCAUCGUCGUCGUCCUc -3'
miRNA:   3'- gCGCCGg---CGcCGUGGCGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 210452 0.68 0.398744
Target:  5'- uCGCaGCCGaCGcuacCGCCGCCACCGacaCCCa -3'
miRNA:   3'- -GCGcCGGC-GCc---GUGGCGGUGGC---GGGa -5'
16059 5' -67.9 NC_004065.1 + 210354 0.66 0.488278
Target:  5'- -cCGGCC-CGGCAUaCGCCACCuUCCa -3'
miRNA:   3'- gcGCCGGcGCCGUG-GCGGUGGcGGGa -5'
16059 5' -67.9 NC_004065.1 + 209310 0.66 0.502965
Target:  5'- uCGUcGCCGuCGGUGCCGUCgugugcuacuggggACUGCCCg -3'
miRNA:   3'- -GCGcCGGC-GCCGUGGCGG--------------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 209154 0.71 0.238232
Target:  5'- cCGCGGCCGUGuCGCuCGCCucucuaccuACCGCUCg -3'
miRNA:   3'- -GCGCCGGCGCcGUG-GCGG---------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 208343 0.69 0.354543
Target:  5'- uCGCGGUCGCGuaucugACCGCgACCGUCUa -3'
miRNA:   3'- -GCGCCGGCGCcg----UGGCGgUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 208044 0.78 0.08245
Target:  5'- gCGUGGCCGUGGCgGCCcUCACCGUCCUg -3'
miRNA:   3'- -GCGCCGGCGCCG-UGGcGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 207520 0.66 0.496894
Target:  5'- aGCGGUCGuCGGUccuccUCGCCGCgCGCuCCg -3'
miRNA:   3'- gCGCCGGC-GCCGu----GGCGGUG-GCG-GGa -5'
16059 5' -67.9 NC_004065.1 + 205532 0.69 0.333776
Target:  5'- gCGCucagGGCCgGCGGCGgUGCCAUcuacgCGCCCa -3'
miRNA:   3'- -GCG----CCGG-CGCCGUgGCGGUG-----GCGGGa -5'
16059 5' -67.9 NC_004065.1 + 205494 0.71 0.238232
Target:  5'- cCGCuGCCGuCGuCGCUGCCGCCGCCa- -3'
miRNA:   3'- -GCGcCGGC-GCcGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 202741 0.7 0.301176
Target:  5'- aCGCGucGUCgGCGGCGCCGCCGgucucuUCGUCCUc -3'
miRNA:   3'- -GCGC--CGG-CGCCGUGGCGGU------GGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 202183 0.67 0.413458
Target:  5'- uCGCc-CCGCGGCACCacggccaGCCACCaCCCc -3'
miRNA:   3'- -GCGccGGCGCCGUGG-------CGGUGGcGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.