miRNA display CGI


Results 1 - 20 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 24483 0.75 0.138635
Target:  5'- --gGGCgCGUagauGGCACCGCCGCCGgCCCUg -3'
miRNA:   3'- gcgCCG-GCG----CCGUGGCGGUGGC-GGGA- -5'
16059 5' -67.9 NC_004065.1 + 76383 0.77 0.104631
Target:  5'- gCGCcGCCGCGGaugaGCuCGCCGCCGUCCg -3'
miRNA:   3'- -GCGcCGGCGCCg---UG-GCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 99141 0.76 0.109438
Target:  5'- uGCGGCCGaCGGCgguaaacACCGUgGCCGCCUc -3'
miRNA:   3'- gCGCCGGC-GCCG-------UGGCGgUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 127133 0.76 0.109697
Target:  5'- uCGCGGCgGCGGCGCUaccggcggcgGCgAUCGCCCUc -3'
miRNA:   3'- -GCGCCGgCGCCGUGG----------CGgUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 115156 0.76 0.109697
Target:  5'- cCGcCGGCCgGCGGCACCGUCGUCGCCa- -3'
miRNA:   3'- -GC-GCCGG-CGCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 186153 0.76 0.112314
Target:  5'- gGUGGCCGUGGagGCCGCCACCGaacuCCa -3'
miRNA:   3'- gCGCCGGCGCCg-UGGCGGUGGCg---GGa -5'
16059 5' -67.9 NC_004065.1 + 200436 0.76 0.114991
Target:  5'- uGCaGGaCCGCGGuCACCGCgGCCGCCg- -3'
miRNA:   3'- gCG-CC-GGCGCC-GUGGCGgUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 87407 0.76 0.120523
Target:  5'- aGCGGCCuugguuCGGCACCGCCAUCaGCuCCUc -3'
miRNA:   3'- gCGCCGGc-----GCCGUGGCGGUGG-CG-GGA- -5'
16059 5' -67.9 NC_004065.1 + 77980 0.75 0.135137
Target:  5'- aCGCuGGCCGCGGCgaGCCGCCccgggacggaggaGCCGUUCg -3'
miRNA:   3'- -GCG-CCGGCGCCG--UGGCGG-------------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 74607 0.78 0.091596
Target:  5'- gGCGGUgGCGGCcgaguucccggaaccGCCGCCACCGCUa- -3'
miRNA:   3'- gCGCCGgCGCCG---------------UGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 59716 0.78 0.084449
Target:  5'- aGCGGCCGCGGCGCacgGCgACCGUCg- -3'
miRNA:   3'- gCGCCGGCGCCGUGg--CGgUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 58065 0.78 0.080497
Target:  5'- cCGCcGCCGC--CGCCGCCACCGCCCg -3'
miRNA:   3'- -GCGcCGGCGccGUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 128419 0.84 0.029628
Target:  5'- aGCGGCgGCGGCGCCGCCACCGagUCUg -3'
miRNA:   3'- gCGCCGgCGCCGUGGCGGUGGCg-GGA- -5'
16059 5' -67.9 NC_004065.1 + 110189 0.82 0.042834
Target:  5'- gGCGGCCGCGaCGC-GCCGCCGCCCg -3'
miRNA:   3'- gCGCCGGCGCcGUGgCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 201022 0.81 0.052078
Target:  5'- cCGCGuGCgCGCGGCGCCucGCCACCGCCg- -3'
miRNA:   3'- -GCGC-CG-GCGCCGUGG--CGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 97693 0.8 0.058813
Target:  5'- uCGCGGUCGCu--GCCGCCGCCGCCCg -3'
miRNA:   3'- -GCGCCGGCGccgUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 56645 0.8 0.060258
Target:  5'- aGCGGCCGCGGCACCcuUCACCGUCg- -3'
miRNA:   3'- gCGCCGGCGCCGUGGc-GGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 24579 0.79 0.076721
Target:  5'- gCGCGGuCCGCGcGUgucgucGCCGCCACCGCCg- -3'
miRNA:   3'- -GCGCC-GGCGC-CG------UGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 170254 0.79 0.076721
Target:  5'- uCGUGGCCGUGGC--CGCCGCCGCCa- -3'
miRNA:   3'- -GCGCCGGCGCCGugGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 118169 0.78 0.080304
Target:  5'- cCGCGGCgGCGGCcgucacgGCUGCCGCCGUUCg -3'
miRNA:   3'- -GCGCCGgCGCCG-------UGGCGGUGGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.