miRNA display CGI


Results 1 - 20 of 324 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16059 5' -67.9 NC_004065.1 + 120148 0.86 0.024318
Target:  5'- aCGCGGCCGCGGCGaCGCCgguggcACCGCCCg -3'
miRNA:   3'- -GCGCCGGCGCCGUgGCGG------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 159887 0.75 0.136717
Target:  5'- aGCGuGCuCGUguguuucugucgaucGGCGCCGCCGCCGCCgCUg -3'
miRNA:   3'- gCGC-CG-GCG---------------CCGUGGCGGUGGCGG-GA- -5'
16059 5' -67.9 NC_004065.1 + 65468 0.74 0.152065
Target:  5'- aGCGGU--CGGCGCCGCCGCCgGCUCg -3'
miRNA:   3'- gCGCCGgcGCCGUGGCGGUGG-CGGGa -5'
16059 5' -67.9 NC_004065.1 + 221762 0.66 0.514325
Target:  5'- uGCGGuuGCGGCGaCGgUAUCGUCUg -3'
miRNA:   3'- gCGCCggCGCCGUgGCgGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 78877 0.79 0.069506
Target:  5'- uCGCGGUcgccgacgaucauCGCGGCGuuGCCGCCGCCUUc -3'
miRNA:   3'- -GCGCCG-------------GCGCCGUggCGGUGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 120831 0.79 0.076721
Target:  5'- --aGGCCGaGGCGCCGCCGCCGgCCUu -3'
miRNA:   3'- gcgCCGGCgCCGUGGCGGUGGCgGGA- -5'
16059 5' -67.9 NC_004065.1 + 151357 0.78 0.086494
Target:  5'- uCGgGcGCCGCGGCGCCgGCCGCUGCgCUg -3'
miRNA:   3'- -GCgC-CGGCGCCGUGG-CGGUGGCGgGA- -5'
16059 5' -67.9 NC_004065.1 + 63863 0.77 0.099787
Target:  5'- uCGCGGUgcagaCGuCGGCGCCGCUGCCGCCg- -3'
miRNA:   3'- -GCGCCG-----GC-GCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 77718 0.76 0.117726
Target:  5'- uCGUccCCGcCGGCACCGCCGCCGCCg- -3'
miRNA:   3'- -GCGccGGC-GCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 99949 0.75 0.135137
Target:  5'- cCGCGGCgGCGGCuGCUGCUgcgaaacGCCGUCCg -3'
miRNA:   3'- -GCGCCGgCGCCG-UGGCGG-------UGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 141652 0.75 0.129286
Target:  5'- gGCGGUgGCGGUGCCGCgGCCGCg-- -3'
miRNA:   3'- gCGCCGgCGCCGUGGCGgUGGCGgga -5'
16059 5' -67.9 NC_004065.1 + 86893 0.76 0.112314
Target:  5'- aCGCaGGUCGCGGCGCCGgUcUCGCCCUc -3'
miRNA:   3'- -GCG-CCGGCGCCGUGGCgGuGGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 75871 0.81 0.050824
Target:  5'- cCGCcGCCGCcGcCGCCGCCACCGCCCg -3'
miRNA:   3'- -GCGcCGGCGcC-GUGGCGGUGGCGGGa -5'
16059 5' -67.9 NC_004065.1 + 102887 0.75 0.132336
Target:  5'- uCGCcGCCGcCGGUAgCGCCGCCGCCg- -3'
miRNA:   3'- -GCGcCGGC-GCCGUgGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 155405 0.81 0.056571
Target:  5'- aGCGGUgGCGGCgguuccgggaacucgGCCGCCACCGCCa- -3'
miRNA:   3'- gCGCCGgCGCCG---------------UGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 66383 0.77 0.102182
Target:  5'- cCGCuGCCGCuGcCGCCGCCGCCGCCgCUc -3'
miRNA:   3'- -GCGcCGGCGcC-GUGGCGGUGGCGG-GA- -5'
16059 5' -67.9 NC_004065.1 + 199879 0.75 0.132336
Target:  5'- cCGCGGCUGggucCGGUcgcuCCGCCAcCCGCCCUc -3'
miRNA:   3'- -GCGCCGGC----GCCGu---GGCGGU-GGCGGGA- -5'
16059 5' -67.9 NC_004065.1 + 173389 0.75 0.138635
Target:  5'- aGgGuGCCGCGGcCGCUGCCACCGCauCCa -3'
miRNA:   3'- gCgC-CGGCGCC-GUGGCGGUGGCG--GGa -5'
16059 5' -67.9 NC_004065.1 + 101609 0.8 0.060258
Target:  5'- -uCGGUgGCGGCGCCGCCGCCGCUg- -3'
miRNA:   3'- gcGCCGgCGCCGUGGCGGUGGCGGga -5'
16059 5' -67.9 NC_004065.1 + 208044 0.78 0.08245
Target:  5'- gCGUGGCCGUGGCgGCCcUCACCGUCCUg -3'
miRNA:   3'- -GCGCCGGCGCCG-UGGcGGUGGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.