miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 110688 0.66 0.949635
Target:  5'- ----gGCGCCAucccgcuGaCGCUgguaGACGCCCu -3'
miRNA:   3'- ugaugCGCGGUu------C-GCGAag--CUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 78577 0.66 0.949635
Target:  5'- aACUGCGCGaCCugcucacGCGCU---ACGCCUn -3'
miRNA:   3'- -UGAUGCGC-GGuu-----CGCGAagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 1159 0.66 0.949635
Target:  5'- ----aGCGCCAGGCGCUgaCGGaGCUg -3'
miRNA:   3'- ugaugCGCGGUUCGCGAa-GCUgCGGg -5'
1606 3' -56.8 NC_001347.2 + 15633 0.66 0.949635
Target:  5'- --gACGCGCgaGGGCGCggagCGGgugauuacCGCCCu -3'
miRNA:   3'- ugaUGCGCGg-UUCGCGaa--GCU--------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 17005 0.66 0.945481
Target:  5'- --gACGCGUuuaccauuuggCAGGCGCg-CGugGUCCg -3'
miRNA:   3'- ugaUGCGCG-----------GUUCGCGaaGCugCGGG- -5'
1606 3' -56.8 NC_001347.2 + 76350 0.66 0.945481
Target:  5'- uCUGaaucaGCGCCGAGaGCacgUCaACGCCCu -3'
miRNA:   3'- uGAUg----CGCGGUUCgCGa--AGcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 88032 0.66 0.945481
Target:  5'- aACUAC-CGCUGAGCGgCUgcggaaugCGGCccggGCCCg -3'
miRNA:   3'- -UGAUGcGCGGUUCGC-GAa-------GCUG----CGGG- -5'
1606 3' -56.8 NC_001347.2 + 106290 0.66 0.945481
Target:  5'- cGCcGCcaaCGCCGAGCuCUgUCGGCGCCg -3'
miRNA:   3'- -UGaUGc--GCGGUUCGcGA-AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 31591 0.66 0.945481
Target:  5'- aGCUGCGuCGUCAaggacGGCGUgUUgGACGCUg -3'
miRNA:   3'- -UGAUGC-GCGGU-----UCGCG-AAgCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 126079 0.66 0.942884
Target:  5'- gGCcGCGCGCCAgcccaucccccucucGGCGCUcau-CGCCa -3'
miRNA:   3'- -UGaUGCGCGGU---------------UCGCGAagcuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 703 0.66 0.941109
Target:  5'- gACUGCgugGCGCCAAGg----CGGCGCCa -3'
miRNA:   3'- -UGAUG---CGCGGUUCgcgaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 140331 0.66 0.941109
Target:  5'- gGCUGCGcCGC--GGgGCUgugCGAgGCCUg -3'
miRNA:   3'- -UGAUGC-GCGguUCgCGAa--GCUgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 15976 0.66 0.941109
Target:  5'- -gUACaGCGCCGAcGUGCUUCGcgacuGgGUCCg -3'
miRNA:   3'- ugAUG-CGCGGUU-CGCGAAGC-----UgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 161957 0.66 0.941109
Target:  5'- cCUugGCGUCGGGgGUggUC-ACGUCCa -3'
miRNA:   3'- uGAugCGCGGUUCgCGa-AGcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 142056 0.66 0.941109
Target:  5'- gGCUACGCgucugGCCGAcGUGCUcaucaaacgcUCG-CGCCg -3'
miRNA:   3'- -UGAUGCG-----CGGUU-CGCGA----------AGCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 102906 0.66 0.941109
Target:  5'- aGCUACGCGCU-GGUGacgUUGAuCGCCg -3'
miRNA:   3'- -UGAUGCGCGGuUCGCga-AGCU-GCGGg -5'
1606 3' -56.8 NC_001347.2 + 149444 0.66 0.936515
Target:  5'- aGCU-CGUgGCC--GCGCUaUCGAUGCCUg -3'
miRNA:   3'- -UGAuGCG-CGGuuCGCGA-AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 197359 0.66 0.936515
Target:  5'- uUUAUGCGCCGccAGCGCg--GuCGCCa -3'
miRNA:   3'- uGAUGCGCGGU--UCGCGaagCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 167740 0.66 0.936515
Target:  5'- --cGCGCGCgUAAGCGUcuaggUUGGCGCgCg -3'
miRNA:   3'- ugaUGCGCG-GUUCGCGa----AGCUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 158087 0.66 0.936515
Target:  5'- cACUcaGCGCC--GCGCUgcgCGGCGgCCu -3'
miRNA:   3'- -UGAugCGCGGuuCGCGAa--GCUGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.