miRNA display CGI


Results 61 - 80 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 161270 0.67 0.919778
Target:  5'- aGCUggACGUGUCGuuccAGCGCgUUCaacccgcguguaaaGGCGCCCa -3'
miRNA:   3'- -UGA--UGCGCGGU----UCGCG-AAG--------------CUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 165129 0.67 0.920861
Target:  5'- cGCUGcCGUGUCc-GCGCUUucucggaCGACGCCg -3'
miRNA:   3'- -UGAU-GCGCGGuuCGCGAA-------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 2033 0.67 0.9214
Target:  5'- gGCggggACGCGCCGuGCGCgauagCGGgaGCCg -3'
miRNA:   3'- -UGa---UGCGCGGUuCGCGaa---GCUg-CGGg -5'
1606 3' -56.8 NC_001347.2 + 130298 0.67 0.915915
Target:  5'- aACUGCGCauCCAAcGCGCgUUGGCaCCCu -3'
miRNA:   3'- -UGAUGCGc-GGUU-CGCGaAGCUGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 28234 0.67 0.913659
Target:  5'- uCUGCGUuGCCAcGCGUacuggcuggaacgUCGGCGCCg -3'
miRNA:   3'- uGAUGCG-CGGUuCGCGa------------AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 193270 0.67 0.910209
Target:  5'- cCUGCgGCGUUAcuugcGGCGCUUCGAgGgCUCg -3'
miRNA:   3'- uGAUG-CGCGGU-----UCGCGAAGCUgC-GGG- -5'
1606 3' -56.8 NC_001347.2 + 173163 0.67 0.910209
Target:  5'- ---cCGCGUCAAGCGUaaCGuuaaaaaaGCGCCCu -3'
miRNA:   3'- ugauGCGCGGUUCGCGaaGC--------UGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 109436 0.67 0.910209
Target:  5'- aACU-CGUaaccaCCGAGCGCaa-GACGCCCc -3'
miRNA:   3'- -UGAuGCGc----GGUUCGCGaagCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 142134 0.68 0.878419
Target:  5'- ---cCGCGUCAugcuGGCGCUg-GACGCCg -3'
miRNA:   3'- ugauGCGCGGU----UCGCGAagCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 175085 0.68 0.878419
Target:  5'- --gACGCGgCAGGCGCacuUUCuGGCGCgCg -3'
miRNA:   3'- ugaUGCGCgGUUCGCG---AAG-CUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 195831 0.68 0.871432
Target:  5'- cGCUGucUGgGCC--GCGCUUCGAggcgUGCCCu -3'
miRNA:   3'- -UGAU--GCgCGGuuCGCGAAGCU----GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 2241 0.68 0.87773
Target:  5'- uGCcGCGCGCCAugcugguGGUGCUgcuggacgagcUgGGCGCCg -3'
miRNA:   3'- -UGaUGCGCGGU-------UCGCGA-----------AgCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 98863 0.68 0.878419
Target:  5'- uGCUGCGCuCCGAGCGaaUCacCGCCUg -3'
miRNA:   3'- -UGAUGCGcGGUUCGCgaAGcuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 27503 0.68 0.878419
Target:  5'- aGCUuuCGCGCUAAGCGUUggGA-GCUCa -3'
miRNA:   3'- -UGAu-GCGCGGUUCGCGAagCUgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 208821 0.68 0.878419
Target:  5'- cGCUGCgccGCGCCGccguccucgaAGCGCca--GCGCCCg -3'
miRNA:   3'- -UGAUG---CGCGGU----------UCGCGaagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 199891 0.68 0.878419
Target:  5'- cGCUGCGCGCCcgcGUGC-UCGugaaaACGCUg -3'
miRNA:   3'- -UGAUGCGCGGuu-CGCGaAGC-----UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 91121 0.68 0.884533
Target:  5'- aGCUGCuguuucacgaGCGCCucaaGAGCGCgcUCGAuaaacugacguuuCGCCCg -3'
miRNA:   3'- -UGAUG----------CGCGG----UUCGCGa-AGCU-------------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 82286 0.68 0.884533
Target:  5'- gGCUACGUGgaaaagaCUAAGCGCgUUCGACaGCgCu -3'
miRNA:   3'- -UGAUGCGC-------GGUUCGCG-AAGCUG-CGgG- -5'
1606 3' -56.8 NC_001347.2 + 194463 0.68 0.885202
Target:  5'- -gUGCGCGCCAcGGCGggUCGuugGCuCCCg -3'
miRNA:   3'- ugAUGCGCGGU-UCGCgaAGC---UGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 189143 0.68 0.870722
Target:  5'- gACUccACGCGCCGcggugacacaaacAGCGUcUCggGACGCCg -3'
miRNA:   3'- -UGA--UGCGCGGU-------------UCGCGaAG--CUGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.