miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 189143 0.68 0.870722
Target:  5'- gACUccACGCGCCGcggugacacaaacAGCGUcUCggGACGCCg -3'
miRNA:   3'- -UGA--UGCGCGGU-------------UCGCGaAG--CUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 105409 0.68 0.864244
Target:  5'- gACUGCGCgGCCugcuGCGCaauaUGACGCUg -3'
miRNA:   3'- -UGAUGCG-CGGuu--CGCGaa--GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 129496 0.68 0.856861
Target:  5'- --aGCGCGUCugcAGCGCggCGcCGCCUc -3'
miRNA:   3'- ugaUGCGCGGu--UCGCGaaGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 111237 0.68 0.854609
Target:  5'- aGCUGCGCGCCGgucucuuuccacggAGCaacgucauGCg-CGGCGCCg -3'
miRNA:   3'- -UGAUGCGCGGU--------------UCG--------CGaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 104813 0.68 0.864244
Target:  5'- uGCUACGCGCCAAGgacugcaucCGCggCGACa--- -3'
miRNA:   3'- -UGAUGCGCGGUUC---------GCGaaGCUGcggg -5'
1606 3' -56.8 NC_001347.2 + 125835 0.68 0.856861
Target:  5'- aGCUGCaucGUGCC-GGCGCgacgaUGACGCUCg -3'
miRNA:   3'- -UGAUG---CGCGGuUCGCGaa---GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 181745 0.68 0.871432
Target:  5'- cGCUGCguGCGCCGacGGCGUUUcaaggugugCGACGUCg -3'
miRNA:   3'- -UGAUG--CGCGGU--UCGCGAA---------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 38775 0.68 0.864244
Target:  5'- --cGCGCGCgGGGUGCcc--ACGCCCa -3'
miRNA:   3'- ugaUGCGCGgUUCGCGaagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 25401 0.68 0.862783
Target:  5'- gGCUugacCGCGUUguuGAGCGCcuucugcuacgCGGCGCCCg -3'
miRNA:   3'- -UGAu---GCGCGG---UUCGCGaa---------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 191708 0.68 0.867143
Target:  5'- --cGCGuCGCguAGCGCUUCGAuccacgaggucaccaCGUCCu -3'
miRNA:   3'- ugaUGC-GCGguUCGCGAAGCU---------------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 200448 0.68 0.864244
Target:  5'- --gACGCGCCuGGC-CUUCGugGgUCg -3'
miRNA:   3'- ugaUGCGCGGuUCGcGAAGCugCgGG- -5'
1606 3' -56.8 NC_001347.2 + 94296 0.68 0.864244
Target:  5'- cGCU-CGCgGUCAaaAGCGCgaUCGcCGCCCa -3'
miRNA:   3'- -UGAuGCG-CGGU--UCGCGa-AGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 1025 0.68 0.864244
Target:  5'- gGCUACGacgaCGCCGGGCca--CGGCGUCCa -3'
miRNA:   3'- -UGAUGC----GCGGUUCGcgaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 88663 0.67 0.898137
Target:  5'- aGCUuCGCGCauccacuGGCGCcggCG-CGCCCu -3'
miRNA:   3'- -UGAuGCGCGgu-----UCGCGaa-GCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 197772 0.67 0.900621
Target:  5'- uGCUACGUgaGCCGcGUGCUgcuacgucaccgugUGACGCCg -3'
miRNA:   3'- -UGAUGCG--CGGUuCGCGAa-------------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 192191 0.67 0.898137
Target:  5'- --aGCG-GCCGcGGCGCgggcUCGGCGUCCc -3'
miRNA:   3'- ugaUGCgCGGU-UCGCGa---AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 26046 0.67 0.898137
Target:  5'- -aUACGcCGCCGGGCGCUgCGgu-CCCg -3'
miRNA:   3'- ugAUGC-GCGGUUCGCGAaGCugcGGG- -5'
1606 3' -56.8 NC_001347.2 + 77598 0.67 0.898137
Target:  5'- -gUugGUGUgGAGCGCcUCGuuGCGCCa -3'
miRNA:   3'- ugAugCGCGgUUCGCGaAGC--UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 142348 0.67 0.898137
Target:  5'- --cGCGUGCUGGaCGC--CGACGCCCa -3'
miRNA:   3'- ugaUGCGCGGUUcGCGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 17788 0.67 0.891776
Target:  5'- gACaGCGCGaCGAGCGCUgcgaaGAUGCUa -3'
miRNA:   3'- -UGaUGCGCgGUUCGCGAag---CUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.