miRNA display CGI


Results 101 - 120 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 189347 0.67 0.891776
Target:  5'- --gACGC-CCGAGCag-UCGACGCCg -3'
miRNA:   3'- ugaUGCGcGGUUCGcgaAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 16089 0.67 0.898137
Target:  5'- aGCUACGCGaCCAGcUGCUggaCGACGUg- -3'
miRNA:   3'- -UGAUGCGC-GGUUcGCGAa--GCUGCGgg -5'
1606 3' -56.8 NC_001347.2 + 94909 0.67 0.898137
Target:  5'- gGCUACGCGCCAccggauAGagaGCcUCGuauaccAgGCCCg -3'
miRNA:   3'- -UGAUGCGCGGU------UCg--CGaAGC------UgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 17788 0.67 0.891776
Target:  5'- gACaGCGCGaCGAGCGCUgcgaaGAUGCUa -3'
miRNA:   3'- -UGaUGCGCgGUUCGCGAag---CUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 88663 0.67 0.898137
Target:  5'- aGCUuCGCGCauccacuGGCGCcggCG-CGCCCu -3'
miRNA:   3'- -UGAuGCGCGgu-----UCGCGaa-GCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 77598 0.67 0.898137
Target:  5'- -gUugGUGUgGAGCGCcUCGuuGCGCCa -3'
miRNA:   3'- ugAugCGCGgUUCGCGaAGC--UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 15976 0.66 0.941109
Target:  5'- -gUACaGCGCCGAcGUGCUUCGcgacuGgGUCCg -3'
miRNA:   3'- ugAUG-CGCGGUU-CGCGAAGC-----UgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 161957 0.66 0.941109
Target:  5'- cCUugGCGUCGGGgGUggUC-ACGUCCa -3'
miRNA:   3'- uGAugCGCGGUUCgCGa-AGcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 142056 0.66 0.941109
Target:  5'- gGCUACGCgucugGCCGAcGUGCUcaucaaacgcUCG-CGCCg -3'
miRNA:   3'- -UGAUGCG-----CGGUU-CGCGA----------AGCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 88032 0.66 0.945481
Target:  5'- aACUAC-CGCUGAGCGgCUgcggaaugCGGCccggGCCCg -3'
miRNA:   3'- -UGAUGcGCGGUUCGC-GAa-------GCUG----CGGG- -5'
1606 3' -56.8 NC_001347.2 + 106290 0.66 0.945481
Target:  5'- cGCcGCcaaCGCCGAGCuCUgUCGGCGCCg -3'
miRNA:   3'- -UGaUGc--GCGGUUCGcGA-AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 1159 0.66 0.949635
Target:  5'- ----aGCGCCAGGCGCUgaCGGaGCUg -3'
miRNA:   3'- ugaugCGCGGUUCGCGAa-GCUgCGGg -5'
1606 3' -56.8 NC_001347.2 + 140331 0.66 0.941109
Target:  5'- gGCUGCGcCGC--GGgGCUgugCGAgGCCUg -3'
miRNA:   3'- -UGAUGC-GCGguUCgCGAa--GCUgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 128207 0.66 0.9317
Target:  5'- --gACGCGCUcgcuuaacguGAcGCGUUaUCGACGCCg -3'
miRNA:   3'- ugaUGCGCGG----------UU-CGCGA-AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 3701 0.66 0.936515
Target:  5'- uCUugGCGCCGauucAGCGUgugaaacUCGuacaGCGCUCa -3'
miRNA:   3'- uGAugCGCGGU----UCGCGa------AGC----UGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 117821 0.66 0.936044
Target:  5'- cACUGCGCcaGCCAGGUagaagaaGCacCGGCGgCCg -3'
miRNA:   3'- -UGAUGCG--CGGUUCG-------CGaaGCUGCgGG- -5'
1606 3' -56.8 NC_001347.2 + 88245 0.66 0.9317
Target:  5'- cGCUGC-CGCCGgugaagagAGCGCggCGuACGCUg -3'
miRNA:   3'- -UGAUGcGCGGU--------UCGCGaaGC-UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 4893 0.66 0.9317
Target:  5'- cGCUGCucugaaGCCAAGUGCcgaCGGCGCUUu -3'
miRNA:   3'- -UGAUGcg----CGGUUCGCGaa-GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 228745 0.66 0.931206
Target:  5'- --cGCGCgggggacgggguaGCCGAGUGCU---GCGCCCu -3'
miRNA:   3'- ugaUGCG-------------CGGUUCGCGAagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 79642 0.66 0.9317
Target:  5'- uGCUGCaccacaGCGCCAGGCGgCUgaucugcagCG-CGCUCu -3'
miRNA:   3'- -UGAUG------CGCGGUUCGC-GAa--------GCuGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.