miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 157742 1.12 0.00261
Target:  5'- uACUACGCGCCAAGCGCUUCGACGCCCg -3'
miRNA:   3'- -UGAUGCGCGGUUCGCGAAGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 1690 0.81 0.244742
Target:  5'- uGCUGCGCGCCGAGgagGCgaCGGCGCUCg -3'
miRNA:   3'- -UGAUGCGCGGUUCg--CGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 2361 0.8 0.274628
Target:  5'- uGCUGgGCGCgCuGGCGCUgggacgcgagUCGGCGCCCg -3'
miRNA:   3'- -UGAUgCGCG-GuUCGCGA----------AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 153767 0.78 0.35807
Target:  5'- ---uCGCGCCAGuGCGCcgUCGACGCCg -3'
miRNA:   3'- ugauGCGCGGUU-CGCGa-AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 93065 0.77 0.422827
Target:  5'- gACaACGCGCCGcGCGCacUUCcACGCCCa -3'
miRNA:   3'- -UGaUGCGCGGUuCGCG--AAGcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 82467 0.75 0.531776
Target:  5'- cGCUGCucuaggccGCGCCGA-CGCUcaUCGGCGUCCg -3'
miRNA:   3'- -UGAUG--------CGCGGUUcGCGA--AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 29235 0.74 0.541355
Target:  5'- gGCUACGCGgaUCGAGUGC--CGACGCCg -3'
miRNA:   3'- -UGAUGCGC--GGUUCGCGaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 30585 0.74 0.56068
Target:  5'- gACgACGCGCCGGGCgGCUUCcuGCGgCCg -3'
miRNA:   3'- -UGaUGCGCGGUUCG-CGAAGc-UGCgGG- -5'
1606 3' -56.8 NC_001347.2 + 196948 0.74 0.579211
Target:  5'- aGCUGCGCcggggcuGUCGcGCGCcgcCGACGCCCg -3'
miRNA:   3'- -UGAUGCG-------CGGUuCGCGaa-GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 171749 0.73 0.59
Target:  5'- --cGCGCGCUuggacGCGCUaaugUCGGCGUCCg -3'
miRNA:   3'- ugaUGCGCGGuu---CGCGA----AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 8342 0.73 0.609699
Target:  5'- ----aGCGCCGAggguagguGCGUUUCGGCGCCg -3'
miRNA:   3'- ugaugCGCGGUU--------CGCGAAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 77860 0.73 0.619576
Target:  5'- uGCUGCuGCaggugGCCGAGCGCcUgGGCGCCg -3'
miRNA:   3'- -UGAUG-CG-----CGGUUCGCGaAgCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 194635 0.73 0.629461
Target:  5'- -aUGCGUGCCGGaCGCaaacaCGGCGCCCg -3'
miRNA:   3'- ugAUGCGCGGUUcGCGaa---GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 93195 0.73 0.629461
Target:  5'- uUUGgGCGCCGAGCGC-UCG-CGCUg -3'
miRNA:   3'- uGAUgCGCGGUUCGCGaAGCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 188861 0.72 0.684646
Target:  5'- uGCUG-GCGCC-GGCGCUgccauccucacgcCGACGCCUg -3'
miRNA:   3'- -UGAUgCGCGGuUCGCGAa------------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 78674 0.72 0.688556
Target:  5'- gGCcgUGCGCaAGGCGCgcgacgCGGCGCCCu -3'
miRNA:   3'- -UGauGCGCGgUUCGCGaa----GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 78418 0.71 0.707988
Target:  5'- uGCUGcCGcCGCCAcccGGCcCggCGGCGCCCg -3'
miRNA:   3'- -UGAU-GC-GCGGU---UCGcGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 1912 0.71 0.707988
Target:  5'- gGCUG-GCGCUggGCGCggUGcUGCCCg -3'
miRNA:   3'- -UGAUgCGCGGuuCGCGaaGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 128445 0.71 0.707988
Target:  5'- uGCUGCGUgGCCGucaagcGGCGCgaCGGCGCgCg -3'
miRNA:   3'- -UGAUGCG-CGGU------UCGCGaaGCUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 1726 0.71 0.707988
Target:  5'- aGCUGCGCcggcgguggGCCGgcacgacgguGGCGCUgcaGACGCCg -3'
miRNA:   3'- -UGAUGCG---------CGGU----------UCGCGAag-CUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.