miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 41185 0.71 0.727179
Target:  5'- gACUGgGCcgacaGCgCAAGCGaCUUUGACGCCg -3'
miRNA:   3'- -UGAUgCG-----CG-GUUCGC-GAAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 105141 0.71 0.746065
Target:  5'- --gACGCGCCAcGCucGCUcUGACGCCg -3'
miRNA:   3'- ugaUGCGCGGUuCG--CGAaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 152096 0.7 0.755372
Target:  5'- aGCUACGUGCgCGAGCaCggCG-UGCCCa -3'
miRNA:   3'- -UGAUGCGCG-GUUCGcGaaGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 142415 0.7 0.755372
Target:  5'- cGCUcuuCGCGCCcaguGGCGUcggcgCGGCGUCCg -3'
miRNA:   3'- -UGAu--GCGCGGu---UCGCGaa---GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 160727 0.7 0.764578
Target:  5'- uGCUGCGUGUCGAuGCGCUggugccaggCGGUGCUCa -3'
miRNA:   3'- -UGAUGCGCGGUU-CGCGAa--------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 21349 0.7 0.773674
Target:  5'- gGCUGCGCGCCuc-CGUccUCGuCGCCUu -3'
miRNA:   3'- -UGAUGCGCGGuucGCGa-AGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 178314 0.7 0.782652
Target:  5'- --cACGCGUCAgcuGGUGUUguucaUGACGCCCa -3'
miRNA:   3'- ugaUGCGCGGU---UCGCGAa----GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 172055 0.7 0.782652
Target:  5'- --cGCGCGCUgggAAGCGCUgCG-CGCCg -3'
miRNA:   3'- ugaUGCGCGG---UUCGCGAaGCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 85520 0.7 0.782652
Target:  5'- aGCggGCGCGC---GCGCUugagCGugGCCCu -3'
miRNA:   3'- -UGa-UGCGCGguuCGCGAa---GCugCGGG- -5'
1606 3' -56.8 NC_001347.2 + 15057 0.7 0.782652
Target:  5'- -gUAUGUGCUAGGCGUgacggGACGUCCg -3'
miRNA:   3'- ugAUGCGCGGUUCGCGaag--CUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 140801 0.7 0.791503
Target:  5'- --aGCGCGCacggcaaAAGCGaCUUUGugGCCg -3'
miRNA:   3'- ugaUGCGCGg------UUCGC-GAAGCugCGGg -5'
1606 3' -56.8 NC_001347.2 + 153868 0.7 0.800221
Target:  5'- ---cCGCGCCGAGCGg--CGACGUgCa -3'
miRNA:   3'- ugauGCGCGGUUCGCgaaGCUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 141739 0.69 0.808797
Target:  5'- --cACGUGUUAGGUGCUaguccgcgguucUCGuCGCCCg -3'
miRNA:   3'- ugaUGCGCGGUUCGCGA------------AGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 38038 0.69 0.808797
Target:  5'- gACU-CGCGuCCcAGCGCcagCG-CGCCCa -3'
miRNA:   3'- -UGAuGCGC-GGuUCGCGaa-GCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 189457 0.69 0.808797
Target:  5'- cGC-ACGCGuccgcCCGAGCGCagacggugacgUCGACGCCg -3'
miRNA:   3'- -UGaUGCGC-----GGUUCGCGa----------AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 156423 0.69 0.817223
Target:  5'- uGCUGCGCgagcuguacGCCAAGaaaGCcgcgUCGACGUCg -3'
miRNA:   3'- -UGAUGCG---------CGGUUCg--CGa---AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 79038 0.69 0.817223
Target:  5'- aGCUGauuUGCaGCCGcgagaaGGCGCgUCGGCGCCa -3'
miRNA:   3'- -UGAU---GCG-CGGU------UCGCGaAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 93472 0.69 0.817223
Target:  5'- -aUGCGCGCCcgauAAGCGUcca-ACGCCCg -3'
miRNA:   3'- ugAUGCGCGG----UUCGCGaagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 195636 0.69 0.817223
Target:  5'- gGCUguGCGCGCC-GGC-CUguugugUCGcACGCCCg -3'
miRNA:   3'- -UGA--UGCGCGGuUCGcGA------AGC-UGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 75935 0.69 0.83199
Target:  5'- -aUGCGCGCCAAGUucuggcggaaccagaGCU-CGAcgggcugcggcgaguCGCCCa -3'
miRNA:   3'- ugAUGCGCGGUUCG---------------CGAaGCU---------------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.