miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 167740 0.66 0.936515
Target:  5'- --cGCGCGCgUAAGCGUcuaggUUGGCGCgCg -3'
miRNA:   3'- ugaUGCGCG-GUUCGCGa----AGCUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 197359 0.66 0.936515
Target:  5'- uUUAUGCGCCGccAGCGCg--GuCGCCa -3'
miRNA:   3'- uGAUGCGCGGU--UCGCGaagCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 149444 0.66 0.936515
Target:  5'- aGCU-CGUgGCC--GCGCUaUCGAUGCCUg -3'
miRNA:   3'- -UGAuGCG-CGGuuCGCGA-AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 169131 0.66 0.936515
Target:  5'- --cGCGCGCC--GCGCUgcaGugGCUg -3'
miRNA:   3'- ugaUGCGCGGuuCGCGAag-CugCGGg -5'
1606 3' -56.8 NC_001347.2 + 39200 0.66 0.936044
Target:  5'- -gUugGCcaaaaacGCCGcGCGCcacaCGGCGCCCa -3'
miRNA:   3'- ugAugCG-------CGGUuCGCGaa--GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 117821 0.66 0.936044
Target:  5'- cACUGCGCcaGCCAGGUagaagaaGCacCGGCGgCCg -3'
miRNA:   3'- -UGAUGCG--CGGUUCG-------CGaaGCUGCgGG- -5'
1606 3' -56.8 NC_001347.2 + 79642 0.66 0.9317
Target:  5'- uGCUGCaccacaGCGCCAGGCGgCUgaucugcagCG-CGCUCu -3'
miRNA:   3'- -UGAUG------CGCGGUUCGC-GAa--------GCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 4893 0.66 0.9317
Target:  5'- cGCUGCucugaaGCCAAGUGCcgaCGGCGCUUu -3'
miRNA:   3'- -UGAUGcg----CGGUUCGCGaa-GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 88245 0.66 0.9317
Target:  5'- cGCUGC-CGCCGgugaagagAGCGCggCGuACGCUg -3'
miRNA:   3'- -UGAUGcGCGGU--------UCGCGaaGC-UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 128207 0.66 0.9317
Target:  5'- --gACGCGCUcgcuuaacguGAcGCGUUaUCGACGCCg -3'
miRNA:   3'- ugaUGCGCGG----------UU-CGCGA-AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 228745 0.66 0.931206
Target:  5'- --cGCGCgggggacgggguaGCCGAGUGCU---GCGCCCu -3'
miRNA:   3'- ugaUGCG-------------CGGUUCGCGAagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 108599 0.66 0.926661
Target:  5'- cACUACccgucgGCgGCCGAGCGCaaacacCGACaccuGCCCg -3'
miRNA:   3'- -UGAUG------CG-CGGUUCGCGaa----GCUG----CGGG- -5'
1606 3' -56.8 NC_001347.2 + 1826 0.66 0.926661
Target:  5'- -gUACGaGCCGuuCGCgUCGGCGCCg -3'
miRNA:   3'- ugAUGCgCGGUucGCGaAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 82814 0.66 0.926661
Target:  5'- uGCUcaaacCGCGUCGugAGCGCggCGGCuCCCa -3'
miRNA:   3'- -UGAu----GCGCGGU--UCGCGaaGCUGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 763 0.66 0.926145
Target:  5'- aGCUGCGUGUCGcccgcggcacacgGGCGaCgaaGGCGUCCg -3'
miRNA:   3'- -UGAUGCGCGGU-------------UCGC-GaagCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 39539 0.67 0.9214
Target:  5'- gUUGCGCuggGCCAugGGCGCcggacaccucCGACGUCCa -3'
miRNA:   3'- uGAUGCG---CGGU--UCGCGaa--------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 2484 0.67 0.9214
Target:  5'- --cGCGCGCC--GCGCUgugGGCGCgCg -3'
miRNA:   3'- ugaUGCGCGGuuCGCGAag-CUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 165797 0.67 0.9214
Target:  5'- cGCU-CGCGCUccaAAGCGag-CGAuguCGCCCu -3'
miRNA:   3'- -UGAuGCGCGG---UUCGCgaaGCU---GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 127035 0.67 0.9214
Target:  5'- uCUAUGCGCCu--CGCUaCGcACaGCCCa -3'
miRNA:   3'- uGAUGCGCGGuucGCGAaGC-UG-CGGG- -5'
1606 3' -56.8 NC_001347.2 + 110174 0.67 0.9214
Target:  5'- cCUGCacUGCCAGGUGCUUCGGCucaucaCCa -3'
miRNA:   3'- uGAUGc-GCGGUUCGCGAAGCUGcg----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.