miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 165797 0.67 0.9214
Target:  5'- cGCU-CGCGCUccaAAGCGag-CGAuguCGCCCu -3'
miRNA:   3'- -UGAuGCGCGG---UUCGCgaaGCU---GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 2484 0.67 0.9214
Target:  5'- --cGCGCGCC--GCGCUgugGGCGCgCg -3'
miRNA:   3'- ugaUGCGCGGuuCGCGAag-CUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 194021 0.67 0.9214
Target:  5'- gGCUgGCGCGCgaccuCAGGgGCUUCGuGCGCg- -3'
miRNA:   3'- -UGA-UGCGCG-----GUUCgCGAAGC-UGCGgg -5'
1606 3' -56.8 NC_001347.2 + 165129 0.67 0.920861
Target:  5'- cGCUGcCGUGUCc-GCGCUUucucggaCGACGCCg -3'
miRNA:   3'- -UGAU-GCGCGGuuCGCGAA-------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 161270 0.67 0.919778
Target:  5'- aGCUggACGUGUCGuuccAGCGCgUUCaacccgcguguaaaGGCGCCCa -3'
miRNA:   3'- -UGA--UGCGCGGU----UCGCG-AAG--------------CUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 130298 0.67 0.915915
Target:  5'- aACUGCGCauCCAAcGCGCgUUGGCaCCCu -3'
miRNA:   3'- -UGAUGCGc-GGUU-CGCGaAGCUGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 28234 0.67 0.913659
Target:  5'- uCUGCGUuGCCAcGCGUacuggcuggaacgUCGGCGCCg -3'
miRNA:   3'- uGAUGCG-CGGUuCGCGa------------AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 193270 0.67 0.910209
Target:  5'- cCUGCgGCGUUAcuugcGGCGCUUCGAgGgCUCg -3'
miRNA:   3'- uGAUG-CGCGGU-----UCGCGAAGCUgC-GGG- -5'
1606 3' -56.8 NC_001347.2 + 173163 0.67 0.910209
Target:  5'- ---cCGCGUCAAGCGUaaCGuuaaaaaaGCGCCCu -3'
miRNA:   3'- ugauGCGCGGUUCGCGaaGC--------UGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 109436 0.67 0.910209
Target:  5'- aACU-CGUaaccaCCGAGCGCaa-GACGCCCc -3'
miRNA:   3'- -UGAuGCGc----GGUUCGCGaagCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 26348 0.67 0.910209
Target:  5'- cGCUGgGCuaCAAGUGCagCGACGauCCCu -3'
miRNA:   3'- -UGAUgCGcgGUUCGCGaaGCUGC--GGG- -5'
1606 3' -56.8 NC_001347.2 + 222658 0.67 0.906679
Target:  5'- --gACGCgaguguuccauaaaaGCCGGGCGCUcCGGCGagaCCa -3'
miRNA:   3'- ugaUGCG---------------CGGUUCGCGAaGCUGCg--GG- -5'
1606 3' -56.8 NC_001347.2 + 93001 0.67 0.904282
Target:  5'- gGCUGCGagaGCCAAcGuCGCa--GGCGUCCg -3'
miRNA:   3'- -UGAUGCg--CGGUU-C-GCGaagCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 161736 0.67 0.904282
Target:  5'- cGCUA-GCGUCAcGGCGCUcUCGACaGCUUg -3'
miRNA:   3'- -UGAUgCGCGGU-UCGCGA-AGCUG-CGGG- -5'
1606 3' -56.8 NC_001347.2 + 208433 0.67 0.904282
Target:  5'- --aGCGcCGCCuAGCGCcgucaacUCGAUGCCg -3'
miRNA:   3'- ugaUGC-GCGGuUCGCGa------AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 197772 0.67 0.900621
Target:  5'- uGCUACGUgaGCCGcGUGCUgcuacgucaccgugUGACGCCg -3'
miRNA:   3'- -UGAUGCG--CGGUuCGCGAa-------------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 142348 0.67 0.898137
Target:  5'- --cGCGUGCUGGaCGC--CGACGCCCa -3'
miRNA:   3'- ugaUGCGCGGUUcGCGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 26046 0.67 0.898137
Target:  5'- -aUACGcCGCCGGGCGCUgCGgu-CCCg -3'
miRNA:   3'- ugAUGC-GCGGUUCGCGAaGCugcGGG- -5'
1606 3' -56.8 NC_001347.2 + 77598 0.67 0.898137
Target:  5'- -gUugGUGUgGAGCGCcUCGuuGCGCCa -3'
miRNA:   3'- ugAugCGCGgUUCGCGaAGC--UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 85336 0.67 0.898137
Target:  5'- --aGCGcCGCCGccAGCGC--CGuCGCCCg -3'
miRNA:   3'- ugaUGC-GCGGU--UCGCGaaGCuGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.