miRNA display CGI


Results 61 - 80 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 77598 0.67 0.898137
Target:  5'- -gUugGUGUgGAGCGCcUCGuuGCGCCa -3'
miRNA:   3'- ugAugCGCGgUUCGCGaAGC--UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 26046 0.67 0.898137
Target:  5'- -aUACGcCGCCGGGCGCUgCGgu-CCCg -3'
miRNA:   3'- ugAUGC-GCGGUUCGCGAaGCugcGGG- -5'
1606 3' -56.8 NC_001347.2 + 142348 0.67 0.898137
Target:  5'- --cGCGUGCUGGaCGC--CGACGCCCa -3'
miRNA:   3'- ugaUGCGCGGUUcGCGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 192191 0.67 0.898137
Target:  5'- --aGCG-GCCGcGGCGCgggcUCGGCGUCCc -3'
miRNA:   3'- ugaUGCgCGGU-UCGCGa---AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 209766 0.67 0.891776
Target:  5'- --gACG-GCCAGuucuuGCGCUUCGGcCGCCg -3'
miRNA:   3'- ugaUGCgCGGUU-----CGCGAAGCU-GCGGg -5'
1606 3' -56.8 NC_001347.2 + 189347 0.67 0.891776
Target:  5'- --gACGC-CCGAGCag-UCGACGCCg -3'
miRNA:   3'- ugaUGCGcGGUUCGcgaAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 17788 0.67 0.891776
Target:  5'- gACaGCGCGaCGAGCGCUgcgaaGAUGCUa -3'
miRNA:   3'- -UGaUGCGCgGUUCGCGAag---CUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 92369 0.67 0.891128
Target:  5'- --gACGCGgcagcaaCCAGGCGC--CGGCGCCg -3'
miRNA:   3'- ugaUGCGC-------GGUUCGCGaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 201625 0.68 0.887857
Target:  5'- cACaACGUGCCGucugaacuguaccugGGCGCcUCGgGCGCCa -3'
miRNA:   3'- -UGaUGCGCGGU---------------UCGCGaAGC-UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 194463 0.68 0.885202
Target:  5'- -gUGCGCGCCAcGGCGggUCGuugGCuCCCg -3'
miRNA:   3'- ugAUGCGCGGU-UCGCgaAGC---UGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 91121 0.68 0.884533
Target:  5'- aGCUGCuguuucacgaGCGCCucaaGAGCGCgcUCGAuaaacugacguuuCGCCCg -3'
miRNA:   3'- -UGAUG----------CGCGG----UUCGCGa-AGCU-------------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 82286 0.68 0.884533
Target:  5'- gGCUACGUGgaaaagaCUAAGCGCgUUCGACaGCgCu -3'
miRNA:   3'- -UGAUGCGC-------GGUUCGCG-AAGCUG-CGgG- -5'
1606 3' -56.8 NC_001347.2 + 98863 0.68 0.878419
Target:  5'- uGCUGCGCuCCGAGCGaaUCacCGCCUg -3'
miRNA:   3'- -UGAUGCGcGGUUCGCgaAGcuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 175085 0.68 0.878419
Target:  5'- --gACGCGgCAGGCGCacuUUCuGGCGCgCg -3'
miRNA:   3'- ugaUGCGCgGUUCGCG---AAG-CUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 142134 0.68 0.878419
Target:  5'- ---cCGCGUCAugcuGGCGCUg-GACGCCg -3'
miRNA:   3'- ugauGCGCGGU----UCGCGAagCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 27503 0.68 0.878419
Target:  5'- aGCUuuCGCGCUAAGCGUUggGA-GCUCa -3'
miRNA:   3'- -UGAu-GCGCGGUUCGCGAagCUgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 208821 0.68 0.878419
Target:  5'- cGCUGCgccGCGCCGccguccucgaAGCGCca--GCGCCCg -3'
miRNA:   3'- -UGAUG---CGCGGU----------UCGCGaagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 199891 0.68 0.878419
Target:  5'- cGCUGCGCGCCcgcGUGC-UCGugaaaACGCUg -3'
miRNA:   3'- -UGAUGCGCGGuu-CGCGaAGC-----UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 2241 0.68 0.87773
Target:  5'- uGCcGCGCGCCAugcugguGGUGCUgcuggacgagcUgGGCGCCg -3'
miRNA:   3'- -UGaUGCGCGGU-------UCGCGA-----------AgCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 195831 0.68 0.871432
Target:  5'- cGCUGucUGgGCC--GCGCUUCGAggcgUGCCCu -3'
miRNA:   3'- -UGAU--GCgCGGuuCGCGAAGCU----GCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.