Results 81 - 100 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 181745 | 0.68 | 0.871432 |
Target: 5'- cGCUGCguGCGCCGacGGCGUUUcaaggugugCGACGUCg -3' miRNA: 3'- -UGAUG--CGCGGU--UCGCGAA---------GCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 195831 | 0.68 | 0.871432 |
Target: 5'- cGCUGucUGgGCC--GCGCUUCGAggcgUGCCCu -3' miRNA: 3'- -UGAU--GCgCGGuuCGCGAAGCU----GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 189143 | 0.68 | 0.870722 |
Target: 5'- gACUccACGCGCCGcggugacacaaacAGCGUcUCggGACGCCg -3' miRNA: 3'- -UGA--UGCGCGGU-------------UCGCGaAG--CUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 78607 | 0.68 | 0.869296 |
Target: 5'- cGCgGCGCGaggacuccaugagcCUggGCGCgcgCGACGCCg -3' miRNA: 3'- -UGaUGCGC--------------GGuuCGCGaa-GCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 191708 | 0.68 | 0.867143 |
Target: 5'- --cGCGuCGCguAGCGCUUCGAuccacgaggucaccaCGUCCu -3' miRNA: 3'- ugaUGC-GCGguUCGCGAAGCU---------------GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 38775 | 0.68 | 0.864244 |
Target: 5'- --cGCGCGCgGGGUGCcc--ACGCCCa -3' miRNA: 3'- ugaUGCGCGgUUCGCGaagcUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 94296 | 0.68 | 0.864244 |
Target: 5'- cGCU-CGCgGUCAaaAGCGCgaUCGcCGCCCa -3' miRNA: 3'- -UGAuGCG-CGGU--UCGCGa-AGCuGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 1025 | 0.68 | 0.864244 |
Target: 5'- gGCUACGacgaCGCCGGGCca--CGGCGUCCa -3' miRNA: 3'- -UGAUGC----GCGGUUCGcgaaGCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 200448 | 0.68 | 0.864244 |
Target: 5'- --gACGCGCCuGGC-CUUCGugGgUCg -3' miRNA: 3'- ugaUGCGCGGuUCGcGAAGCugCgGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 105409 | 0.68 | 0.864244 |
Target: 5'- gACUGCGCgGCCugcuGCGCaauaUGACGCUg -3' miRNA: 3'- -UGAUGCG-CGGuu--CGCGaa--GCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 104813 | 0.68 | 0.864244 |
Target: 5'- uGCUACGCGCCAAGgacugcaucCGCggCGACa--- -3' miRNA: 3'- -UGAUGCGCGGUUC---------GCGaaGCUGcggg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 25401 | 0.68 | 0.862783 |
Target: 5'- gGCUugacCGCGUUguuGAGCGCcuucugcuacgCGGCGCCCg -3' miRNA: 3'- -UGAu---GCGCGG---UUCGCGaa---------GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 129496 | 0.68 | 0.856861 |
Target: 5'- --aGCGCGUCugcAGCGCggCGcCGCCUc -3' miRNA: 3'- ugaUGCGCGGu--UCGCGaaGCuGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 125835 | 0.68 | 0.856861 |
Target: 5'- aGCUGCaucGUGCC-GGCGCgacgaUGACGCUCg -3' miRNA: 3'- -UGAUG---CGCGGuUCGCGaa---GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 111237 | 0.68 | 0.854609 |
Target: 5'- aGCUGCGCGCCGgucucuuuccacggAGCaacgucauGCg-CGGCGCCg -3' miRNA: 3'- -UGAUGCGCGGU--------------UCG--------CGaaGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 138950 | 0.69 | 0.849288 |
Target: 5'- aACUAacCGCGCU-AGCGCcggUGGgGCCCg -3' miRNA: 3'- -UGAU--GCGCGGuUCGCGaa-GCUgCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 174735 | 0.69 | 0.841531 |
Target: 5'- aACUACGCGCCGcuGCGCgaaGAacugggcuaUGUCCg -3' miRNA: 3'- -UGAUGCGCGGUu-CGCGaagCU---------GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 185050 | 0.69 | 0.841531 |
Target: 5'- --cGCGCGCUuga-GCUgugCGAUGCCCu -3' miRNA: 3'- ugaUGCGCGGuucgCGAa--GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 77959 | 0.69 | 0.841531 |
Target: 5'- aGCUGCGCGgCAAGCacauccGCUUguacgUGGCGgCCg -3' miRNA: 3'- -UGAUGCGCgGUUCG------CGAA-----GCUGCgGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 109852 | 0.69 | 0.841531 |
Target: 5'- ---cCGgGCCAugcauCGCcUCGACGCCCa -3' miRNA: 3'- ugauGCgCGGUuc---GCGaAGCUGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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