miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 703 0.66 0.941109
Target:  5'- gACUGCgugGCGCCAAGg----CGGCGCCa -3'
miRNA:   3'- -UGAUG---CGCGGUUCgcgaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 763 0.66 0.926145
Target:  5'- aGCUGCGUGUCGcccgcggcacacgGGCGaCgaaGGCGUCCg -3'
miRNA:   3'- -UGAUGCGCGGU-------------UCGC-GaagCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 1025 0.68 0.864244
Target:  5'- gGCUACGacgaCGCCGGGCca--CGGCGUCCa -3'
miRNA:   3'- -UGAUGC----GCGGUUCGcgaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 1159 0.66 0.949635
Target:  5'- ----aGCGCCAGGCGCUgaCGGaGCUg -3'
miRNA:   3'- ugaugCGCGGUUCGCGAa-GCUgCGGg -5'
1606 3' -56.8 NC_001347.2 + 1690 0.81 0.244742
Target:  5'- uGCUGCGCGCCGAGgagGCgaCGGCGCUCg -3'
miRNA:   3'- -UGAUGCGCGGUUCg--CGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 1726 0.71 0.707988
Target:  5'- aGCUGCGCcggcgguggGCCGgcacgacgguGGCGCUgcaGACGCCg -3'
miRNA:   3'- -UGAUGCG---------CGGU----------UCGCGAag-CUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 1826 0.66 0.926661
Target:  5'- -gUACGaGCCGuuCGCgUCGGCGCCg -3'
miRNA:   3'- ugAUGCgCGGUucGCGaAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 1912 0.71 0.707988
Target:  5'- gGCUG-GCGCUggGCGCggUGcUGCCCg -3'
miRNA:   3'- -UGAUgCGCGGuuCGCGaaGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 2033 0.67 0.9214
Target:  5'- gGCggggACGCGCCGuGCGCgauagCGGgaGCCg -3'
miRNA:   3'- -UGa---UGCGCGGUuCGCGaa---GCUg-CGGg -5'
1606 3' -56.8 NC_001347.2 + 2241 0.68 0.87773
Target:  5'- uGCcGCGCGCCAugcugguGGUGCUgcuggacgagcUgGGCGCCg -3'
miRNA:   3'- -UGaUGCGCGGU-------UCGCGA-----------AgCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 2361 0.8 0.274628
Target:  5'- uGCUGgGCGCgCuGGCGCUgggacgcgagUCGGCGCCCg -3'
miRNA:   3'- -UGAUgCGCG-GuUCGCGA----------AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 2484 0.67 0.9214
Target:  5'- --cGCGCGCC--GCGCUgugGGCGCgCg -3'
miRNA:   3'- ugaUGCGCGGuuCGCGAag-CUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 3701 0.66 0.936515
Target:  5'- uCUugGCGCCGauucAGCGUgugaaacUCGuacaGCGCUCa -3'
miRNA:   3'- uGAugCGCGGU----UCGCGa------AGC----UGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 4893 0.66 0.9317
Target:  5'- cGCUGCucugaaGCCAAGUGCcgaCGGCGCUUu -3'
miRNA:   3'- -UGAUGcg----CGGUUCGCGaa-GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 8342 0.73 0.609699
Target:  5'- ----aGCGCCGAggguagguGCGUUUCGGCGCCg -3'
miRNA:   3'- ugaugCGCGGUU--------CGCGAAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 15057 0.7 0.782652
Target:  5'- -gUAUGUGCUAGGCGUgacggGACGUCCg -3'
miRNA:   3'- ugAUGCGCGGUUCGCGaag--CUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 15633 0.66 0.949635
Target:  5'- --gACGCGCgaGGGCGCggagCGGgugauuacCGCCCu -3'
miRNA:   3'- ugaUGCGCGg-UUCGCGaa--GCU--------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 15976 0.66 0.941109
Target:  5'- -gUACaGCGCCGAcGUGCUUCGcgacuGgGUCCg -3'
miRNA:   3'- ugAUG-CGCGGUU-CGCGAAGC-----UgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 16089 0.67 0.898137
Target:  5'- aGCUACGCGaCCAGcUGCUggaCGACGUg- -3'
miRNA:   3'- -UGAUGCGC-GGUUcGCGAa--GCUGCGgg -5'
1606 3' -56.8 NC_001347.2 + 17005 0.66 0.945481
Target:  5'- --gACGCGUuuaccauuuggCAGGCGCg-CGugGUCCg -3'
miRNA:   3'- ugaUGCGCG-----------GUUCGCGaaGCugCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.