miRNA display CGI


Results 21 - 40 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 17788 0.67 0.891776
Target:  5'- gACaGCGCGaCGAGCGCUgcgaaGAUGCUa -3'
miRNA:   3'- -UGaUGCGCgGUUCGCGAag---CUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 21349 0.7 0.773674
Target:  5'- gGCUGCGCGCCuc-CGUccUCGuCGCCUu -3'
miRNA:   3'- -UGAUGCGCGGuucGCGa-AGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 25401 0.68 0.862783
Target:  5'- gGCUugacCGCGUUguuGAGCGCcuucugcuacgCGGCGCCCg -3'
miRNA:   3'- -UGAu---GCGCGG---UUCGCGaa---------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 26046 0.67 0.898137
Target:  5'- -aUACGcCGCCGGGCGCUgCGgu-CCCg -3'
miRNA:   3'- ugAUGC-GCGGUUCGCGAaGCugcGGG- -5'
1606 3' -56.8 NC_001347.2 + 26348 0.67 0.910209
Target:  5'- cGCUGgGCuaCAAGUGCagCGACGauCCCu -3'
miRNA:   3'- -UGAUgCGcgGUUCGCGaaGCUGC--GGG- -5'
1606 3' -56.8 NC_001347.2 + 27503 0.68 0.878419
Target:  5'- aGCUuuCGCGCUAAGCGUUggGA-GCUCa -3'
miRNA:   3'- -UGAu-GCGCGGUUCGCGAagCUgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 28234 0.67 0.913659
Target:  5'- uCUGCGUuGCCAcGCGUacuggcuggaacgUCGGCGCCg -3'
miRNA:   3'- uGAUGCG-CGGUuCGCGa------------AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 29235 0.74 0.541355
Target:  5'- gGCUACGCGgaUCGAGUGC--CGACGCCg -3'
miRNA:   3'- -UGAUGCGC--GGUUCGCGaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 30585 0.74 0.56068
Target:  5'- gACgACGCGCCGGGCgGCUUCcuGCGgCCg -3'
miRNA:   3'- -UGaUGCGCGGUUCG-CGAAGc-UGCgGG- -5'
1606 3' -56.8 NC_001347.2 + 31591 0.66 0.945481
Target:  5'- aGCUGCGuCGUCAaggacGGCGUgUUgGACGCUg -3'
miRNA:   3'- -UGAUGC-GCGGU-----UCGCG-AAgCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 38038 0.69 0.808797
Target:  5'- gACU-CGCGuCCcAGCGCcagCG-CGCCCa -3'
miRNA:   3'- -UGAuGCGC-GGuUCGCGaa-GCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 38775 0.68 0.864244
Target:  5'- --cGCGCGCgGGGUGCcc--ACGCCCa -3'
miRNA:   3'- ugaUGCGCGgUUCGCGaagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 39200 0.66 0.936044
Target:  5'- -gUugGCcaaaaacGCCGcGCGCcacaCGGCGCCCa -3'
miRNA:   3'- ugAugCG-------CGGUuCGCGaa--GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 39539 0.67 0.9214
Target:  5'- gUUGCGCuggGCCAugGGCGCcggacaccucCGACGUCCa -3'
miRNA:   3'- uGAUGCG---CGGU--UCGCGaa--------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 41185 0.71 0.727179
Target:  5'- gACUGgGCcgacaGCgCAAGCGaCUUUGACGCCg -3'
miRNA:   3'- -UGAUgCG-----CG-GUUCGC-GAAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 48837 0.67 0.9214
Target:  5'- aACcACGCGUCAGG-GCggugCGGCGUUCg -3'
miRNA:   3'- -UGaUGCGCGGUUCgCGaa--GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 75935 0.69 0.83199
Target:  5'- -aUGCGCGCCAAGUucuggcggaaccagaGCU-CGAcgggcugcggcgaguCGCCCa -3'
miRNA:   3'- ugAUGCGCGGUUCG---------------CGAaGCU---------------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 76350 0.66 0.945481
Target:  5'- uCUGaaucaGCGCCGAGaGCacgUCaACGCCCu -3'
miRNA:   3'- uGAUg----CGCGGUUCgCGa--AGcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 77598 0.67 0.898137
Target:  5'- -gUugGUGUgGAGCGCcUCGuuGCGCCa -3'
miRNA:   3'- ugAugCGCGgUUCGCGaAGC--UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 77860 0.73 0.619576
Target:  5'- uGCUGCuGCaggugGCCGAGCGCcUgGGCGCCg -3'
miRNA:   3'- -UGAUG-CG-----CGGUUCGCGaAgCUGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.