miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 77959 0.69 0.841531
Target:  5'- aGCUGCGCGgCAAGCacauccGCUUguacgUGGCGgCCg -3'
miRNA:   3'- -UGAUGCGCgGUUCG------CGAA-----GCUGCgGG- -5'
1606 3' -56.8 NC_001347.2 + 78418 0.71 0.707988
Target:  5'- uGCUGcCGcCGCCAcccGGCcCggCGGCGCCCg -3'
miRNA:   3'- -UGAU-GC-GCGGU---UCGcGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 78577 0.66 0.949635
Target:  5'- aACUGCGCGaCCugcucacGCGCU---ACGCCUn -3'
miRNA:   3'- -UGAUGCGC-GGuu-----CGCGAagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 78607 0.68 0.869296
Target:  5'- cGCgGCGCGaggacuccaugagcCUggGCGCgcgCGACGCCg -3'
miRNA:   3'- -UGaUGCGC--------------GGuuCGCGaa-GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 78674 0.72 0.688556
Target:  5'- gGCcgUGCGCaAGGCGCgcgacgCGGCGCCCu -3'
miRNA:   3'- -UGauGCGCGgUUCGCGaa----GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 79038 0.69 0.817223
Target:  5'- aGCUGauuUGCaGCCGcgagaaGGCGCgUCGGCGCCa -3'
miRNA:   3'- -UGAU---GCG-CGGU------UCGCGaAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 79642 0.66 0.9317
Target:  5'- uGCUGCaccacaGCGCCAGGCGgCUgaucugcagCG-CGCUCu -3'
miRNA:   3'- -UGAUG------CGCGGUUCGC-GAa--------GCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 82286 0.68 0.884533
Target:  5'- gGCUACGUGgaaaagaCUAAGCGCgUUCGACaGCgCu -3'
miRNA:   3'- -UGAUGCGC-------GGUUCGCG-AAGCUG-CGgG- -5'
1606 3' -56.8 NC_001347.2 + 82467 0.75 0.531776
Target:  5'- cGCUGCucuaggccGCGCCGA-CGCUcaUCGGCGUCCg -3'
miRNA:   3'- -UGAUG--------CGCGGUUcGCGA--AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 82814 0.66 0.926661
Target:  5'- uGCUcaaacCGCGUCGugAGCGCggCGGCuCCCa -3'
miRNA:   3'- -UGAu----GCGCGGU--UCGCGaaGCUGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 85336 0.67 0.898137
Target:  5'- --aGCGcCGCCGccAGCGC--CGuCGCCCg -3'
miRNA:   3'- ugaUGC-GCGGU--UCGCGaaGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 85520 0.7 0.782652
Target:  5'- aGCggGCGCGC---GCGCUugagCGugGCCCu -3'
miRNA:   3'- -UGa-UGCGCGguuCGCGAa---GCugCGGG- -5'
1606 3' -56.8 NC_001347.2 + 88032 0.66 0.945481
Target:  5'- aACUAC-CGCUGAGCGgCUgcggaaugCGGCccggGCCCg -3'
miRNA:   3'- -UGAUGcGCGGUUCGC-GAa-------GCUG----CGGG- -5'
1606 3' -56.8 NC_001347.2 + 88245 0.66 0.9317
Target:  5'- cGCUGC-CGCCGgugaagagAGCGCggCGuACGCUg -3'
miRNA:   3'- -UGAUGcGCGGU--------UCGCGaaGC-UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 88663 0.67 0.898137
Target:  5'- aGCUuCGCGCauccacuGGCGCcggCG-CGCCCu -3'
miRNA:   3'- -UGAuGCGCGgu-----UCGCGaa-GCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 91121 0.68 0.884533
Target:  5'- aGCUGCuguuucacgaGCGCCucaaGAGCGCgcUCGAuaaacugacguuuCGCCCg -3'
miRNA:   3'- -UGAUG----------CGCGG----UUCGCGa-AGCU-------------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 92369 0.67 0.891128
Target:  5'- --gACGCGgcagcaaCCAGGCGC--CGGCGCCg -3'
miRNA:   3'- ugaUGCGC-------GGUUCGCGaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 93001 0.67 0.904282
Target:  5'- gGCUGCGagaGCCAAcGuCGCa--GGCGUCCg -3'
miRNA:   3'- -UGAUGCg--CGGUU-C-GCGaagCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 93065 0.77 0.422827
Target:  5'- gACaACGCGCCGcGCGCacUUCcACGCCCa -3'
miRNA:   3'- -UGaUGCGCGGUuCGCG--AAGcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 93195 0.73 0.629461
Target:  5'- uUUGgGCGCCGAGCGC-UCG-CGCUg -3'
miRNA:   3'- uGAUgCGCGGUUCGCGaAGCuGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.