miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 93472 0.69 0.817223
Target:  5'- -aUGCGCGCCcgauAAGCGUcca-ACGCCCg -3'
miRNA:   3'- ugAUGCGCGG----UUCGCGaagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 94296 0.68 0.864244
Target:  5'- cGCU-CGCgGUCAaaAGCGCgaUCGcCGCCCa -3'
miRNA:   3'- -UGAuGCG-CGGU--UCGCGa-AGCuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 94909 0.67 0.898137
Target:  5'- gGCUACGCGCCAccggauAGagaGCcUCGuauaccAgGCCCg -3'
miRNA:   3'- -UGAUGCGCGGU------UCg--CGaAGC------UgCGGG- -5'
1606 3' -56.8 NC_001347.2 + 98863 0.68 0.878419
Target:  5'- uGCUGCGCuCCGAGCGaaUCacCGCCUg -3'
miRNA:   3'- -UGAUGCGcGGUUCGCgaAGcuGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 102906 0.66 0.941109
Target:  5'- aGCUACGCGCU-GGUGacgUUGAuCGCCg -3'
miRNA:   3'- -UGAUGCGCGGuUCGCga-AGCU-GCGGg -5'
1606 3' -56.8 NC_001347.2 + 104813 0.68 0.864244
Target:  5'- uGCUACGCGCCAAGgacugcaucCGCggCGACa--- -3'
miRNA:   3'- -UGAUGCGCGGUUC---------GCGaaGCUGcggg -5'
1606 3' -56.8 NC_001347.2 + 105141 0.71 0.746065
Target:  5'- --gACGCGCCAcGCucGCUcUGACGCCg -3'
miRNA:   3'- ugaUGCGCGGUuCG--CGAaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 105409 0.68 0.864244
Target:  5'- gACUGCGCgGCCugcuGCGCaauaUGACGCUg -3'
miRNA:   3'- -UGAUGCG-CGGuu--CGCGaa--GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 106290 0.66 0.945481
Target:  5'- cGCcGCcaaCGCCGAGCuCUgUCGGCGCCg -3'
miRNA:   3'- -UGaUGc--GCGGUUCGcGA-AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 108599 0.66 0.926661
Target:  5'- cACUACccgucgGCgGCCGAGCGCaaacacCGACaccuGCCCg -3'
miRNA:   3'- -UGAUG------CG-CGGUUCGCGaa----GCUG----CGGG- -5'
1606 3' -56.8 NC_001347.2 + 109436 0.67 0.910209
Target:  5'- aACU-CGUaaccaCCGAGCGCaa-GACGCCCc -3'
miRNA:   3'- -UGAuGCGc----GGUUCGCGaagCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 109852 0.69 0.841531
Target:  5'- ---cCGgGCCAugcauCGCcUCGACGCCCa -3'
miRNA:   3'- ugauGCgCGGUuc---GCGaAGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 110174 0.67 0.9214
Target:  5'- cCUGCacUGCCAGGUGCUUCGGCucaucaCCa -3'
miRNA:   3'- uGAUGc-GCGGUUCGCGAAGCUGcg----GG- -5'
1606 3' -56.8 NC_001347.2 + 110688 0.66 0.949635
Target:  5'- ----gGCGCCAucccgcuGaCGCUgguaGACGCCCu -3'
miRNA:   3'- ugaugCGCGGUu------C-GCGAag--CUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 111237 0.68 0.854609
Target:  5'- aGCUGCGCGCCGgucucuuuccacggAGCaacgucauGCg-CGGCGCCg -3'
miRNA:   3'- -UGAUGCGCGGU--------------UCG--------CGaaGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 117821 0.66 0.936044
Target:  5'- cACUGCGCcaGCCAGGUagaagaaGCacCGGCGgCCg -3'
miRNA:   3'- -UGAUGCG--CGGUUCG-------CGaaGCUGCgGG- -5'
1606 3' -56.8 NC_001347.2 + 125835 0.68 0.856861
Target:  5'- aGCUGCaucGUGCC-GGCGCgacgaUGACGCUCg -3'
miRNA:   3'- -UGAUG---CGCGGuUCGCGaa---GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 126079 0.66 0.942884
Target:  5'- gGCcGCGCGCCAgcccaucccccucucGGCGCUcau-CGCCa -3'
miRNA:   3'- -UGaUGCGCGGU---------------UCGCGAagcuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 126678 0.66 0.936515
Target:  5'- --gGCGCGUgguggcuuaCGA-CGCUgacgCGGCGCCCg -3'
miRNA:   3'- ugaUGCGCG---------GUUcGCGAa---GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 127035 0.67 0.9214
Target:  5'- uCUAUGCGCCu--CGCUaCGcACaGCCCa -3'
miRNA:   3'- uGAUGCGCGGuucGCGAaGC-UG-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.