Results 81 - 100 of 141 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 127823 | 0.69 | 0.840746 |
Target: 5'- uUUACGCGCCGuGGCGCaggugcucaaUcacgccgucugucUCGACGCCg -3' miRNA: 3'- uGAUGCGCGGU-UCGCG----------A-------------AGCUGCGGg -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 128207 | 0.66 | 0.9317 |
Target: 5'- --gACGCGCUcgcuuaacguGAcGCGUUaUCGACGCCg -3' miRNA: 3'- ugaUGCGCGG----------UU-CGCGA-AGCUGCGGg -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 128445 | 0.71 | 0.707988 |
Target: 5'- uGCUGCGUgGCCGucaagcGGCGCgaCGGCGCgCg -3' miRNA: 3'- -UGAUGCG-CGGU------UCGCGaaGCUGCGgG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 129496 | 0.68 | 0.856861 |
Target: 5'- --aGCGCGUCugcAGCGCggCGcCGCCUc -3' miRNA: 3'- ugaUGCGCGGu--UCGCGaaGCuGCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 130298 | 0.67 | 0.915915 |
Target: 5'- aACUGCGCauCCAAcGCGCgUUGGCaCCCu -3' miRNA: 3'- -UGAUGCGc-GGUU-CGCGaAGCUGcGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 138950 | 0.69 | 0.849288 |
Target: 5'- aACUAacCGCGCU-AGCGCcggUGGgGCCCg -3' miRNA: 3'- -UGAU--GCGCGGuUCGCGaa-GCUgCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 140331 | 0.66 | 0.941109 |
Target: 5'- gGCUGCGcCGC--GGgGCUgugCGAgGCCUg -3' miRNA: 3'- -UGAUGC-GCGguUCgCGAa--GCUgCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 140801 | 0.7 | 0.791503 |
Target: 5'- --aGCGCGCacggcaaAAGCGaCUUUGugGCCg -3' miRNA: 3'- ugaUGCGCGg------UUCGC-GAAGCugCGGg -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 141739 | 0.69 | 0.808797 |
Target: 5'- --cACGUGUUAGGUGCUaguccgcgguucUCGuCGCCCg -3' miRNA: 3'- ugaUGCGCGGUUCGCGA------------AGCuGCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 142056 | 0.66 | 0.941109 |
Target: 5'- gGCUACGCgucugGCCGAcGUGCUcaucaaacgcUCG-CGCCg -3' miRNA: 3'- -UGAUGCG-----CGGUU-CGCGA----------AGCuGCGGg -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 142134 | 0.68 | 0.878419 |
Target: 5'- ---cCGCGUCAugcuGGCGCUg-GACGCCg -3' miRNA: 3'- ugauGCGCGGU----UCGCGAagCUGCGGg -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 142348 | 0.67 | 0.898137 |
Target: 5'- --cGCGUGCUGGaCGC--CGACGCCCa -3' miRNA: 3'- ugaUGCGCGGUUcGCGaaGCUGCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 142415 | 0.7 | 0.755372 |
Target: 5'- cGCUcuuCGCGCCcaguGGCGUcggcgCGGCGUCCg -3' miRNA: 3'- -UGAu--GCGCGGu---UCGCGaa---GCUGCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 149444 | 0.66 | 0.936515 |
Target: 5'- aGCU-CGUgGCC--GCGCUaUCGAUGCCUg -3' miRNA: 3'- -UGAuGCG-CGGuuCGCGA-AGCUGCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 152096 | 0.7 | 0.755372 |
Target: 5'- aGCUACGUGCgCGAGCaCggCG-UGCCCa -3' miRNA: 3'- -UGAUGCGCG-GUUCGcGaaGCuGCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 153767 | 0.78 | 0.35807 |
Target: 5'- ---uCGCGCCAGuGCGCcgUCGACGCCg -3' miRNA: 3'- ugauGCGCGGUU-CGCGa-AGCUGCGGg -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 153868 | 0.7 | 0.800221 |
Target: 5'- ---cCGCGCCGAGCGg--CGACGUgCa -3' miRNA: 3'- ugauGCGCGGUUCGCgaaGCUGCGgG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 156423 | 0.69 | 0.817223 |
Target: 5'- uGCUGCGCgagcuguacGCCAAGaaaGCcgcgUCGACGUCg -3' miRNA: 3'- -UGAUGCG---------CGGUUCg--CGa---AGCUGCGGg -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 157742 | 1.12 | 0.00261 |
Target: 5'- uACUACGCGCCAAGCGCUUCGACGCCCg -3' miRNA: 3'- -UGAUGCGCGGUUCGCGAAGCUGCGGG- -5' |
|||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 158087 | 0.66 | 0.936515 |
Target: 5'- cACUcaGCGCC--GCGCUgcgCGGCGgCCu -3' miRNA: 3'- -UGAugCGCGGuuCGCGAa--GCUGCgGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home