Results 121 - 140 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1606 | 3' | -56.8 | NC_001347.2 | + | 189347 | 0.67 | 0.891776 |
Target: 5'- --gACGC-CCGAGCag-UCGACGCCg -3' miRNA: 3'- ugaUGCGcGGUUCGcgaAGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 189457 | 0.69 | 0.808797 |
Target: 5'- cGC-ACGCGuccgcCCGAGCGCagacggugacgUCGACGCCg -3' miRNA: 3'- -UGaUGCGC-----GGUUCGCGa----------AGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 191708 | 0.68 | 0.867143 |
Target: 5'- --cGCGuCGCguAGCGCUUCGAuccacgaggucaccaCGUCCu -3' miRNA: 3'- ugaUGC-GCGguUCGCGAAGCU---------------GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 192191 | 0.67 | 0.898137 |
Target: 5'- --aGCG-GCCGcGGCGCgggcUCGGCGUCCc -3' miRNA: 3'- ugaUGCgCGGU-UCGCGa---AGCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 193270 | 0.67 | 0.910209 |
Target: 5'- cCUGCgGCGUUAcuugcGGCGCUUCGAgGgCUCg -3' miRNA: 3'- uGAUG-CGCGGU-----UCGCGAAGCUgC-GGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 194021 | 0.67 | 0.9214 |
Target: 5'- gGCUgGCGCGCgaccuCAGGgGCUUCGuGCGCg- -3' miRNA: 3'- -UGA-UGCGCG-----GUUCgCGAAGC-UGCGgg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 194463 | 0.68 | 0.885202 |
Target: 5'- -gUGCGCGCCAcGGCGggUCGuugGCuCCCg -3' miRNA: 3'- ugAUGCGCGGU-UCGCgaAGC---UGcGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 194635 | 0.73 | 0.629461 |
Target: 5'- -aUGCGUGCCGGaCGCaaacaCGGCGCCCg -3' miRNA: 3'- ugAUGCGCGGUUcGCGaa---GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 195636 | 0.69 | 0.817223 |
Target: 5'- gGCUguGCGCGCC-GGC-CUguugugUCGcACGCCCg -3' miRNA: 3'- -UGA--UGCGCGGuUCGcGA------AGC-UGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 195831 | 0.68 | 0.871432 |
Target: 5'- cGCUGucUGgGCC--GCGCUUCGAggcgUGCCCu -3' miRNA: 3'- -UGAU--GCgCGGuuCGCGAAGCU----GCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 196948 | 0.74 | 0.579211 |
Target: 5'- aGCUGCGCcggggcuGUCGcGCGCcgcCGACGCCCg -3' miRNA: 3'- -UGAUGCG-------CGGUuCGCGaa-GCUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 197359 | 0.66 | 0.936515 |
Target: 5'- uUUAUGCGCCGccAGCGCg--GuCGCCa -3' miRNA: 3'- uGAUGCGCGGU--UCGCGaagCuGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 197772 | 0.67 | 0.900621 |
Target: 5'- uGCUACGUgaGCCGcGUGCUgcuacgucaccgugUGACGCCg -3' miRNA: 3'- -UGAUGCG--CGGUuCGCGAa-------------GCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 199891 | 0.68 | 0.878419 |
Target: 5'- cGCUGCGCGCCcgcGUGC-UCGugaaaACGCUg -3' miRNA: 3'- -UGAUGCGCGGuu-CGCGaAGC-----UGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 200448 | 0.68 | 0.864244 |
Target: 5'- --gACGCGCCuGGC-CUUCGugGgUCg -3' miRNA: 3'- ugaUGCGCGGuUCGcGAAGCugCgGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 201625 | 0.68 | 0.887857 |
Target: 5'- cACaACGUGCCGucugaacuguaccugGGCGCcUCGgGCGCCa -3' miRNA: 3'- -UGaUGCGCGGU---------------UCGCGaAGC-UGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 208433 | 0.67 | 0.904282 |
Target: 5'- --aGCGcCGCCuAGCGCcgucaacUCGAUGCCg -3' miRNA: 3'- ugaUGC-GCGGuUCGCGa------AGCUGCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 208821 | 0.68 | 0.878419 |
Target: 5'- cGCUGCgccGCGCCGccguccucgaAGCGCca--GCGCCCg -3' miRNA: 3'- -UGAUG---CGCGGU----------UCGCGaagcUGCGGG- -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 209766 | 0.67 | 0.891776 |
Target: 5'- --gACG-GCCAGuucuuGCGCUUCGGcCGCCg -3' miRNA: 3'- ugaUGCgCGGUU-----CGCGAAGCU-GCGGg -5' |
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1606 | 3' | -56.8 | NC_001347.2 | + | 222658 | 0.67 | 0.906679 |
Target: 5'- --gACGCgaguguuccauaaaaGCCGGGCGCUcCGGCGagaCCa -3' miRNA: 3'- ugaUGCG---------------CGGUUCGCGAaGCUGCg--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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