miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 228745 0.66 0.931206
Target:  5'- --cGCGCgggggacgggguaGCCGAGUGCU---GCGCCCu -3'
miRNA:   3'- ugaUGCG-------------CGGUUCGCGAagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 222658 0.67 0.906679
Target:  5'- --gACGCgaguguuccauaaaaGCCGGGCGCUcCGGCGagaCCa -3'
miRNA:   3'- ugaUGCG---------------CGGUUCGCGAaGCUGCg--GG- -5'
1606 3' -56.8 NC_001347.2 + 209766 0.67 0.891776
Target:  5'- --gACG-GCCAGuucuuGCGCUUCGGcCGCCg -3'
miRNA:   3'- ugaUGCgCGGUU-----CGCGAAGCU-GCGGg -5'
1606 3' -56.8 NC_001347.2 + 208821 0.68 0.878419
Target:  5'- cGCUGCgccGCGCCGccguccucgaAGCGCca--GCGCCCg -3'
miRNA:   3'- -UGAUG---CGCGGU----------UCGCGaagcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 208433 0.67 0.904282
Target:  5'- --aGCGcCGCCuAGCGCcgucaacUCGAUGCCg -3'
miRNA:   3'- ugaUGC-GCGGuUCGCGa------AGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 201625 0.68 0.887857
Target:  5'- cACaACGUGCCGucugaacuguaccugGGCGCcUCGgGCGCCa -3'
miRNA:   3'- -UGaUGCGCGGU---------------UCGCGaAGC-UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 200448 0.68 0.864244
Target:  5'- --gACGCGCCuGGC-CUUCGugGgUCg -3'
miRNA:   3'- ugaUGCGCGGuUCGcGAAGCugCgGG- -5'
1606 3' -56.8 NC_001347.2 + 199891 0.68 0.878419
Target:  5'- cGCUGCGCGCCcgcGUGC-UCGugaaaACGCUg -3'
miRNA:   3'- -UGAUGCGCGGuu-CGCGaAGC-----UGCGGg -5'
1606 3' -56.8 NC_001347.2 + 197772 0.67 0.900621
Target:  5'- uGCUACGUgaGCCGcGUGCUgcuacgucaccgugUGACGCCg -3'
miRNA:   3'- -UGAUGCG--CGGUuCGCGAa-------------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 197359 0.66 0.936515
Target:  5'- uUUAUGCGCCGccAGCGCg--GuCGCCa -3'
miRNA:   3'- uGAUGCGCGGU--UCGCGaagCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 196948 0.74 0.579211
Target:  5'- aGCUGCGCcggggcuGUCGcGCGCcgcCGACGCCCg -3'
miRNA:   3'- -UGAUGCG-------CGGUuCGCGaa-GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 195831 0.68 0.871432
Target:  5'- cGCUGucUGgGCC--GCGCUUCGAggcgUGCCCu -3'
miRNA:   3'- -UGAU--GCgCGGuuCGCGAAGCU----GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 195636 0.69 0.817223
Target:  5'- gGCUguGCGCGCC-GGC-CUguugugUCGcACGCCCg -3'
miRNA:   3'- -UGA--UGCGCGGuUCGcGA------AGC-UGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 194635 0.73 0.629461
Target:  5'- -aUGCGUGCCGGaCGCaaacaCGGCGCCCg -3'
miRNA:   3'- ugAUGCGCGGUUcGCGaa---GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 194463 0.68 0.885202
Target:  5'- -gUGCGCGCCAcGGCGggUCGuugGCuCCCg -3'
miRNA:   3'- ugAUGCGCGGU-UCGCgaAGC---UGcGGG- -5'
1606 3' -56.8 NC_001347.2 + 194021 0.67 0.9214
Target:  5'- gGCUgGCGCGCgaccuCAGGgGCUUCGuGCGCg- -3'
miRNA:   3'- -UGA-UGCGCG-----GUUCgCGAAGC-UGCGgg -5'
1606 3' -56.8 NC_001347.2 + 193270 0.67 0.910209
Target:  5'- cCUGCgGCGUUAcuugcGGCGCUUCGAgGgCUCg -3'
miRNA:   3'- uGAUG-CGCGGU-----UCGCGAAGCUgC-GGG- -5'
1606 3' -56.8 NC_001347.2 + 192191 0.67 0.898137
Target:  5'- --aGCG-GCCGcGGCGCgggcUCGGCGUCCc -3'
miRNA:   3'- ugaUGCgCGGU-UCGCGa---AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 191708 0.68 0.867143
Target:  5'- --cGCGuCGCguAGCGCUUCGAuccacgaggucaccaCGUCCu -3'
miRNA:   3'- ugaUGC-GCGguUCGCGAAGCU---------------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 189457 0.69 0.808797
Target:  5'- cGC-ACGCGuccgcCCGAGCGCagacggugacgUCGACGCCg -3'
miRNA:   3'- -UGaUGCGC-----GGUUCGCGa----------AGCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.