miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1606 3' -56.8 NC_001347.2 + 189347 0.67 0.891776
Target:  5'- --gACGC-CCGAGCag-UCGACGCCg -3'
miRNA:   3'- ugaUGCGcGGUUCGcgaAGCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 189143 0.68 0.870722
Target:  5'- gACUccACGCGCCGcggugacacaaacAGCGUcUCggGACGCCg -3'
miRNA:   3'- -UGA--UGCGCGGU-------------UCGCGaAG--CUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 188861 0.72 0.684646
Target:  5'- uGCUG-GCGCC-GGCGCUgccauccucacgcCGACGCCUg -3'
miRNA:   3'- -UGAUgCGCGGuUCGCGAa------------GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 185050 0.69 0.841531
Target:  5'- --cGCGCGCUuga-GCUgugCGAUGCCCu -3'
miRNA:   3'- ugaUGCGCGGuucgCGAa--GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 181745 0.68 0.871432
Target:  5'- cGCUGCguGCGCCGacGGCGUUUcaaggugugCGACGUCg -3'
miRNA:   3'- -UGAUG--CGCGGU--UCGCGAA---------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 178314 0.7 0.782652
Target:  5'- --cACGCGUCAgcuGGUGUUguucaUGACGCCCa -3'
miRNA:   3'- ugaUGCGCGGU---UCGCGAa----GCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 175085 0.68 0.878419
Target:  5'- --gACGCGgCAGGCGCacuUUCuGGCGCgCg -3'
miRNA:   3'- ugaUGCGCgGUUCGCG---AAG-CUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 174735 0.69 0.841531
Target:  5'- aACUACGCGCCGcuGCGCgaaGAacugggcuaUGUCCg -3'
miRNA:   3'- -UGAUGCGCGGUu-CGCGaagCU---------GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 173163 0.67 0.910209
Target:  5'- ---cCGCGUCAAGCGUaaCGuuaaaaaaGCGCCCu -3'
miRNA:   3'- ugauGCGCGGUUCGCGaaGC--------UGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 172055 0.7 0.782652
Target:  5'- --cGCGCGCUgggAAGCGCUgCG-CGCCg -3'
miRNA:   3'- ugaUGCGCGG---UUCGCGAaGCuGCGGg -5'
1606 3' -56.8 NC_001347.2 + 171749 0.73 0.59
Target:  5'- --cGCGCGCUuggacGCGCUaaugUCGGCGUCCg -3'
miRNA:   3'- ugaUGCGCGGuu---CGCGA----AGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 169131 0.66 0.936515
Target:  5'- --cGCGCGCC--GCGCUgcaGugGCUg -3'
miRNA:   3'- ugaUGCGCGGuuCGCGAag-CugCGGg -5'
1606 3' -56.8 NC_001347.2 + 167740 0.66 0.936515
Target:  5'- --cGCGCGCgUAAGCGUcuaggUUGGCGCgCg -3'
miRNA:   3'- ugaUGCGCG-GUUCGCGa----AGCUGCGgG- -5'
1606 3' -56.8 NC_001347.2 + 165797 0.67 0.9214
Target:  5'- cGCU-CGCGCUccaAAGCGag-CGAuguCGCCCu -3'
miRNA:   3'- -UGAuGCGCGG---UUCGCgaaGCU---GCGGG- -5'
1606 3' -56.8 NC_001347.2 + 165129 0.67 0.920861
Target:  5'- cGCUGcCGUGUCc-GCGCUUucucggaCGACGCCg -3'
miRNA:   3'- -UGAU-GCGCGGuuCGCGAA-------GCUGCGGg -5'
1606 3' -56.8 NC_001347.2 + 164362 0.68 0.871432
Target:  5'- gGCgaugaGCGCCGGGcCGUgcUGACGUCCg -3'
miRNA:   3'- -UGaug--CGCGGUUC-GCGaaGCUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 163623 0.66 0.936515
Target:  5'- ----aGCGCCGAGCcg--CGGCuGCCCg -3'
miRNA:   3'- ugaugCGCGGUUCGcgaaGCUG-CGGG- -5'
1606 3' -56.8 NC_001347.2 + 161957 0.66 0.941109
Target:  5'- cCUugGCGUCGGGgGUggUC-ACGUCCa -3'
miRNA:   3'- uGAugCGCGGUUCgCGa-AGcUGCGGG- -5'
1606 3' -56.8 NC_001347.2 + 161736 0.67 0.904282
Target:  5'- cGCUA-GCGUCAcGGCGCUcUCGACaGCUUg -3'
miRNA:   3'- -UGAUgCGCGGU-UCGCGA-AGCUG-CGGG- -5'
1606 3' -56.8 NC_001347.2 + 161270 0.67 0.919778
Target:  5'- aGCUggACGUGUCGuuccAGCGCgUUCaacccgcguguaaaGGCGCCCa -3'
miRNA:   3'- -UGA--UGCGCGGU----UCGCG-AAG--------------CUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.